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findGSEP  

Estimate Genome Size of Polyploid Species Using k-Mer Frequencies
View on CRAN: Click here


Download and install findGSEP package within the R console
Install from CRAN:
install.packages("findGSEP")

Install from Github:
library("remotes")
install_github("cran/findGSEP")

Install by package version:
library("remotes")
install_version("findGSEP", "1.2.0")



Attach the package and use:
library("findGSEP")
Maintained by
Laiyi Fu
[Scholar Profile | Author Map]
First Published: 2024-05-26
Latest Update: 2024-05-26
Description:
Provides tools to estimate the genome size of polyploid species using k-mer frequencies. This package includes functions to process k-mer frequency data and perform genome size estimation by fitting k-mer frequencies with a normal distribution model. It supports handling of complex polyploid genomes and offers various options for customizing the estimation process. The basic method 'findGSE' is detailed in Sun, Hequan, et al. (2018) <doi:10.1093/bioinformatics/btx637>.
How to cite:
Laiyi Fu (2024). findGSEP: Estimate Genome Size of Polyploid Species Using k-Mer Frequencies. R package version 1.2.0, https://cran.r-project.org/web/packages/findGSEP. Accessed 04 Apr. 2025.
Previous versions and publish date:
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Complete documentation for findGSEP
Functions, R codes and Examples using the findGSEP R package
Full findGSEP package functions and examples
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