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fido  

Bayesian Multinomial Logistic Normal Regression
View on CRAN: Click here


Download and install fido package within the R console
Install from CRAN:
install.packages("fido")

Install from Github:
library("remotes")
install_github("cran/fido")

Install by package version:
library("remotes")
install_version("fido", "1.1.2")



Attach the package and use:
library("fido")
Maintained by
Michelle Nixon
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-02-16
Latest Update: 2025-02-27
Description:
Provides methods for fitting and inspection of Bayesian Multinomial Logistic Normal Models using MAP estimation and Laplace Approximation as developed in Silverman et. Al. (2022) . Key functionality is implemented in C++ for scalability. 'fido' replaces the previous package 'stray'.
How to cite:
Michelle Nixon (2022). fido: Bayesian Multinomial Logistic Normal Regression. R package version 1.1.2, https://cran.r-project.org/web/packages/fido. Accessed 06 Mar. 2026.
Previous versions and publish date:
1.0.0 (2022-02-16 21:10), 1.0.1 (2022-05-17 11:10), 1.0.2 (2022-07-06 11:40), 1.0.3 (2022-08-23 09:00), 1.0.4 (2023-03-24 13:00), 1.1.0 (2024-05-30 09:00), 1.1.1 (2024-06-05 23:30)
Other packages that cited fido R package
View fido citation profile
Other R packages that fido depends, imports, suggests or enhances
Complete documentation for fido
Functions, R codes and Examples using the fido R package
Some associated functions: Y . access_dims . alr . alrInv . alrInv_array . alr_array . as.list . as.list.orthusfit . as.list.pibblefit . as.orthusfit . as.pibblefit . basset_fit . check_dims . clr_array . coef . coef.orthusfit . coef.pibblefit . conjugateLinearModel . convert_orthus_covariance . create_default_ilr_base . fido_package . fido_transforms . gather_array . kernels . lambda_to_iqlr . lmvgamma . lmvgamma_deriv . loglikMaltipooCollapsed . loglikPibbleCollapsed . mallard . mallard_family . maltipoo_fit . maltipoofit . metadata . miniclo . miniclo_array . mongrel-deprecated . name . name.orthusfit . name.pibblefit . name_dims . optimMaltipooCollapsed . optimPibbleCollapsed . orthus_fit . orthus_lr_transforms . orthus_sim . orthus_tidy_samples . orthusfit . pcrbias_mock . pibble_fit . pibble_sim . pibble_tidy_samples . pibblefit . plot.pibblefit . ppc . ppc.pibblefit . ppc_summary . predict.bassetfit . predict . predict.pibblefit . print . print.orthusfit . print.pibblefit . random_pibble_init . refit . req.maltipoofit . req . req.orthusfit . req.pibblefit . sample_prior . sample_prior.pibblefit . store_coord . summarise_posterior . summary . summary.orthusfit . summary.pibblefit . uncollapsePibble . verify.bassetfit . verify.maltipoofit . verify . verify.orthusfit . verify.pibblefit . 
Some associated R codes: RcppExports.R . bassetfit_s3.R . driver-utils.R . fido.R . fido_transforms.R . fido_utils.R . fidofit_methods.R . fidofit_s3.R . fit_basset.R . fit_maltipoo.R . fit_orthus.R . fit_pibble.R . generics_s3.R . iqlr.R . kernels.R . mallard-data.R . mallard_family-data.R . maltipoo_sim.R . maltipoofit_s3.R . orthus_sim.R . orthus_transform_wrapper.R . pcrbias_mock-data.R . pibble_plotting.R . pibble_sim.R .  Full fido package functions and examples
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