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fdrtool  

Estimation of (Local) False Discovery Rates and Higher Criticism
View on CRAN: Click here


Download and install fdrtool package within the R console
Install from CRAN:
install.packages("fdrtool")

Install from Github:
library("remotes")
install_github("cran/fdrtool")

Install by package version:
library("remotes")
install_version("fdrtool", "1.2.18")



Attach the package and use:
library("fdrtool")
Maintained by
Korbinian Strimmer
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2006-08-12
Latest Update: 2021-11-13
Description:
Estimates both tail area-based false discovery rates (Fdr) as well as local false discovery rates (fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion of null values and the parameters of the null distribution are adaptively estimated from the data. In addition, the package contains functions for non-parametric density estimation (Grenander estimator), for monotone regression (isotonic regression and antitonic regression with weights), for computing the greatest convex minorant (GCM) and the least concave majorant (LCM), for the half-normal and correlation distributions, and for computing empirical higher criticism (HC) scores and the corresponding decision threshold.
How to cite:
Korbinian Strimmer (2006). fdrtool: Estimation of (Local) False Discovery Rates and Higher Criticism. R package version 1.2.18, https://cran.r-project.org/web/packages/fdrtool. Accessed 03 Dec. 2024.
Previous versions and publish date:
1.0.0 (2006-08-12 13:42), 1.1.0 (2007-02-18 19:50), 1.1.1 (2007-04-11 10:21), 1.1.2 (2007-05-29 17:42), 1.1.3 (2007-06-15 08:09), 1.1.4 (2007-07-07 20:46), 1.2.0 (2007-10-21 17:06), 1.2.1 (2008-01-03 11:40), 1.2.2 (2008-02-25 14:58), 1.2.3 (2008-02-27 08:52), 1.2.4 (2008-03-05 18:59), 1.2.5 (2008-07-07 14:50), 1.2.6 (2009-11-20 08:53), 1.2.7 (2011-03-19 07:20), 1.2.8 (2012-01-19 21:42), 1.2.9 (2012-05-27 18:56), 1.2.10 (2012-07-25 17:17), 1.2.11 (2013-09-15 09:47), 1.2.12 (2014-04-16 00:55), 1.2.13 (2014-11-14 08:16), 1.2.14 (2015-03-09 22:33), 1.2.15 (2015-07-08 09:50), 1.2.16 (2021-01-06 23:30), 1.2.17 (2021-11-13 21:30)
Other packages that cited fdrtool R package
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Other R packages that fdrtool depends, imports, suggests or enhances
Complete documentation for fdrtool
Functions, R codes and Examples using the fdrtool R package
Some associated functions: censored.fit . dcor0 . fdrtool-internal . fdrtool . gcmlcm . grenander . halfnorm . hc.score . monoreg . pval.estimate.eta0 . pvalues . 
Some associated R codes: approximate.fit.R . censored.fit.R . dcor0.R . ecdf.pval.R . fdrtool.R . fndr.cutoff.R . gcmlcm.R . grenander.R . halfnorm.R . hc.score.R . monoreg.R . nullmodel.R . pval.estimate.eta0.R .  Full fdrtool package functions and examples
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