Other packages > Find by keyword >

fastqcr  

Quality Control of Sequencing Data
View on CRAN: Click here


Download and install fastqcr package within the R console
Install from CRAN:
install.packages("fastqcr")

Install from Github:
library("remotes")
install_github("cran/fastqcr")

Install by package version:
library("remotes")
install_version("fastqcr", "0.1.3")



Attach the package and use:
library("fastqcr")
Maintained by
Alboukadel Kassambara
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-04-11
Latest Update: 2023-02-18
Description:
'FASTQC' is the most widely used tool for evaluating the quality of high throughput sequencing data. It produces, for each sample, an html report and a compressed file containing the raw data. If you have hundreds of samples, you are not going to open up each 'HTML' page. You need some way of looking at these data in aggregate. 'fastqcr' Provides helper functions to easily parse, aggregate and analyze 'FastQC' reports for large numbers of samples. It provides a convenient solution for building a 'Multi-QC' report, as well as, a 'one-sample' report with result interpretations.
How to cite:
Alboukadel Kassambara (2017). fastqcr: Quality Control of Sequencing Data. R package version 0.1.3, https://cran.r-project.org/web/packages/fastqcr. Accessed 07 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:38), 0.1.0 (2017-04-11 12:43), 0.1.1 (2018-12-06 06:10), 0.1.2 (2019-01-03 01:20)
Other packages that cited fastqcr R package
View fastqcr citation profile
Other R packages that fastqcr depends, imports, suggests or enhances
Complete documentation for fastqcr
Functions, R codes and Examples using the fastqcr R package
Some associated functions: fastqc . fastqc_install . qc_aggregate . qc_plot . qc_plot_collection . qc_problems . qc_read . qc_read_collection . qc_report . qc_unzip . 
Some associated R codes: fastqc.R . fastqc_install.R . qc_aggregate.R . qc_plot.R . qc_plot_collection.R . qc_problems.R . qc_read.R . qc_read_collection.R . qc_report.R . qc_unzip.R . utilities.R .  Full fastqcr package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

plaqr  
Partially Linear Additive Quantile Regression
Estimation, prediction, thresholding, transformation, and plotting for partially linear additive qua ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
splm  
Econometric Models for Spatial Panel Data
ML and GM estimation and diagnostic testing of econometric models for spatial panel data. ...
Download / Learn more Package Citations See dependency  
skewlmm  
Scale Mixture of Skew-Normal Linear Mixed Models
It fits scale mixture of skew-normal linear mixed models using an expectation–maximization (EM) ty ...
Download / Learn more Package Citations See dependency  
ggTimeSeries  
Time Series Visualisations Using the Grammar of Graphics
Provides additional display mediums for time series visualisations. ...
Download / Learn more Package Citations See dependency  
blandr  
Bland-Altman Method Comparison
Carries out Bland Altman analyses (also known as a Tukey mean-difference plot) as described by JM B ...
Download / Learn more Package Citations See dependency  

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,906

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA