Other packages > Find by keyword >

fastqcr  

Quality Control of Sequencing Data
View on CRAN: Click here


Download and install fastqcr package within the R console
Install from CRAN:
install.packages("fastqcr")

Install from Github:
library("remotes")
install_github("cran/fastqcr")

Install by package version:
library("remotes")
install_version("fastqcr", "0.1.3")



Attach the package and use:
library("fastqcr")
Maintained by
Alboukadel Kassambara
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-04-11
Latest Update: 2023-02-18
Description:
'FASTQC' is the most widely used tool for evaluating the quality of high throughput sequencing data. It produces, for each sample, an html report and a compressed file containing the raw data. If you have hundreds of samples, you are not going to open up each 'HTML' page. You need some way of looking at these data in aggregate. 'fastqcr' Provides helper functions to easily parse, aggregate and analyze 'FastQC' reports for large numbers of samples. It provides a convenient solution for building a 'Multi-QC' report, as well as, a 'one-sample' report with result interpretations.
How to cite:
Alboukadel Kassambara (2017). fastqcr: Quality Control of Sequencing Data. R package version 0.1.3, https://cran.r-project.org/web/packages/fastqcr. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.1.0 (2017-04-11 12:43), 0.1.1 (2018-12-06 06:10), 0.1.2 (2019-01-03 01:20)
Other packages that cited fastqcr R package
View fastqcr citation profile
Other R packages that fastqcr depends, imports, suggests or enhances
Complete documentation for fastqcr
Functions, R codes and Examples using the fastqcr R package
Some associated functions: fastqc . fastqc_install . qc_aggregate . qc_plot . qc_plot_collection . qc_problems . qc_read . qc_read_collection . qc_report . qc_unzip . 
Some associated R codes: fastqc.R . fastqc_install.R . qc_aggregate.R . qc_plot.R . qc_plot_collection.R . qc_problems.R . qc_read.R . qc_read_collection.R . qc_report.R . qc_unzip.R . utilities.R .  Full fastqcr package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
elect  
Estimation of Life Expectancies Using Multi-State Models
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency  
wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  
Rfast2  
A Collection of Efficient and Extremely Fast R Functions II
A collection of fast statistical and utility functions for data analysis. Functions for regression, ...
Download / Learn more Package Citations See dependency  
LOGANTree  
Tree-Based Models for the Analysis of Log Files from Computer-Based Assessments
Enables researchers to model log-file data from computer-based assessments using machine-learning te ...
Download / Learn more Package Citations See dependency  
Maintainer: Qi Qin (view profile)
composits  
Compositional, Multivariate and Univariate Time Series Outlier Ensemble
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA