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familiar  

End-to-End Automated Machine Learning and Model Evaluation
View on CRAN: Click here


Download and install familiar package within the R console
Install from CRAN:
install.packages("familiar")

Install from Github:
library("remotes")
install_github("cran/familiar")

Install by package version:
library("remotes")
install_version("familiar", "1.5.0")



Attach the package and use:
library("familiar")
Maintained by
Alex Zwanenburg
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-02-03
Latest Update: 2024-09-23
Description:
Single unified interface for end-to-end modelling of regression, categorical and time-to-event (survival) outcomes. Models created using familiar are self-containing, and their use does not require additional information such as baseline survival, feature clustering, or feature transformation and normalisation parameters. Model performance, calibration, risk group stratification, (permutation) variable importance, individual conditional expectation, partial dependence, and more, are assessed automatically as part of the evaluation process and exported in tabular format and plotted, and may also be computed manually using export and plot functions. Where possible, metrics and values obtained during the evaluation process come with confidence intervals.
How to cite:
Alex Zwanenburg (2022). familiar: End-to-End Automated Machine Learning and Model Evaluation. R package version 1.5.0, https://cran.r-project.org/web/packages/familiar. Accessed 06 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:37), 1.0.0 (2022-02-03 10:20), 1.1.0 (2022-04-07 21:52), 1.2.0 (2022-08-16 14:40), 1.3.0 (2022-10-16 00:42), 1.4.0 (2022-11-23 22:20), 1.4.1 (2022-12-17 09:40), 1.4.6 (2024-01-24 14:40), 1.4.8 (2024-05-24 23:10), 1.5.0 (2024-09-23 17:50), 2.0.0 (2026-04-23 12:50), 2.0.1 (2026-05-22 20:50)
Other packages that cited familiar R package
View familiar citation profile
Other R packages that familiar depends, imports, suggests or enhances
Complete documentation for familiar
Functions, R codes and Examples using the familiar R package
Some associated functions: aggregate_vimp_table-methods . as_data_object-methods . as_familiar_collection-methods . as_familiar_data-methods . as_familiar_ensemble-methods . coef-methods . create_randomised_groups . dataObject-class . dot-check_class_level_plausibility . dot-check_feature_availability . dot-check_input_identifier_column . dot-check_outcome_type_plausibility . dot-check_survival_time_plausibility . dot-finish_data_preparation . dot-get_default_sign_size . dot-get_iteration_data . dot-impute_outcome_type . dot-load_iterations . dot-parse_categorical_features . dot-parse_evaluation_settings . dot-parse_experiment_settings . dot-parse_feature_selection_settings . dot-parse_file_paths . dot-parse_general_settings . dot-parse_hyperparameter_optimisation_settings . dot-parse_initial_settings . dot-parse_model_development_settings . dot-parse_preprocessing_settings . dot-parse_setup_settings . dot-plot_permutation_variable_importance . dot-plot_univariate_importance . dot-prepare_familiar_data_sets . dot-update_experimental_design_settings . dot-update_initial_settings . encapsulate_path . experimentData-class . export_all-methods . export_auc_data-methods . export_calibration_data-methods . export_calibration_info-methods . export_confusion_matrix_data-methods . export_decision_curve_analysis_data-methods . export_feature_expressions-methods . export_feature_similarity-methods . export_fs_vimp-methods . export_hyperparameters-methods . export_ice_data-methods . export_model_performance-methods . export_model_vimp-methods . export_partial_dependence_data-methods . export_permutation_vimp-methods . export_prediction_data-methods . export_risk_stratification_data-methods . export_risk_stratification_info-methods . export_sample_similarity-methods . export_univariate_analysis_data-methods . extract_auc_data . extract_calibration_data . extract_calibration_info . extract_confusion_matrix . extract_data . extract_decision_curve_data . extract_dispatcher-familiarEnsemble-familiarDataElement-method . extract_experimental_setup . extract_feature_expression . extract_feature_similarity . extract_fs_vimp . extract_hyperparameters . extract_ice . extract_model_vimp . extract_performance . extract_permutation_vimp . extract_predictions . extract_risk_stratification_data . extract_risk_stratification_info . extract_sample_similarity . extract_univariate_analysis . familiar . familiarCollection-class . familiarData-class . familiarDataElement-class . familiarEnsemble-class . familiarHyperparameterLearner-class . familiarMetric-class . familiarModel-class . familiarNoveltyDetector-class . familiarVimpMethod-class . featureInfo-class . featureInfoParameters-class . get_class_names-familiarCollection-method . get_data_set_names-familiarCollection-method . get_feature_names-familiarCollection-method . get_fs_method_names-familiarCollection-method . get_learner_names-familiarCollection-method . get_risk_group_names-familiarCollection-method . get_vimp_table-methods . get_xml_config . is.encapsulated_path . is.waive . outcomeInfo-class . plot_auc_precision_recall_curve-methods . plot_auc_roc_curve-methods . plot_calibration_data-methods . plot_confusion_matrix-methods . plot_decision_curve-methods . plot_feature_similarity-methods . plot_ice-methods . plot_kaplan_meier-methods . plot_model_performance-methods . plot_pd-methods . plot_permutation_variable_importance-methods . plot_sample_clustering-methods . plot_univariate_importance-methods . plot_variable_importance-methods . plotting.check_data_handling . plotting.check_input_args . precompute_data_assignment . precompute_feature_info . precompute_vimp . predict-methods . set_class_names-familiarCollection-method . set_data_set_names-familiarCollection-method . set_feature_names-familiarCollection-method . set_fs_method_names-familiarCollection-method . set_learner_names-familiarCollection-method . set_object_name-familiarData-method . set_object_name-familiarEnsemble-method . set_object_name-familiarModel-method . set_risk_group_names-familiarCollection-method . summary-methods . summon_familiar . theme_familiar . train_familiar . update_model_dir_path-methods . update_object-methods . vcov-methods . vimpTable-class . waiver . 
Some associated R codes: BatchNormalisation.R . BootstrapConfidenceInterval.R . CheckArguments.R . CheckHyperparameters.R . CheckPackages.R . ClassBalance.R . ClusterRepresentation.R . Clustering.R . ClusteringMethod.R . CombatNormalisation.R . DataObject.R . DataParameterChecks.R . DataPreProcessing.R . DataProcessing.R . DataServerBackend.R . ErrorMessages.R . Evaluation.R . ExperimentData.R . ExperimentSetup.R . Familiar.R . FamiliarCollection.R . FamiliarCollectionExport.R . FamiliarData.R . FamiliarDataComputation.R . FamiliarDataComputationAUCCurves.R . FamiliarDataComputationCalibrationData.R . FamiliarDataComputationCalibrationInfo.R . FamiliarDataComputationConfusionMatrix.R . FamiliarDataComputationDecisionCurveAnalysis.R . FamiliarDataComputationFeatureExpression.R . FamiliarDataComputationFeatureSimilarity.R . FamiliarDataComputationHyperparameters.R . FamiliarDataComputationICE.R . FamiliarDataComputationModelPerformance.R . FamiliarDataComputationPermutationVimp.R . FamiliarDataComputationPredictionData.R . FamiliarDataComputationRiskStratificationData.R . FamiliarDataComputationRiskStratificationInfo.R . FamiliarDataComputationSampleSimilarity.R . FamiliarDataComputationUnivariateAnalysis.R . FamiliarDataComputationVimp.R . FamiliarDataElement.R . FamiliarEnsemble.R . FamiliarHyperparameterLearner.R . FamiliarModel.R . FamiliarNoveltyDetector.R . FamiliarObjectConversion.R . FamiliarObjectUpdate.R . FamiliarS4Classes.R . FamiliarS4Generics.R . FamiliarSharedS4Methods.R . FamiliarVimpMethod.R . FeatureInfo.R . FeatureInfoParameters.R . FeatureSelection.R . FunctionWrapperUtilities.R . HyperparameterOptimisation.R . HyperparameterOptimisationMetaLearners.R . HyperparameterOptimisationUtilities.R . HyperparameterS4BayesianAdditiveRegressionTrees.R . HyperparameterS4GaussianProcess.R . HyperparameterS4RandomSearch.R . HyperparameterS4Ranger.R . Imputation.R . Iterations.R . LearnerMain.R . LearnerRecalibration.R . LearnerS4Cox.R . LearnerS4GLM.R . LearnerS4GLMnet.R . LearnerS4KNN.R . LearnerS4MBoost.R . LearnerS4Naive.R . LearnerS4NaiveBayes.R . LearnerS4RFSRC.R . LearnerS4Ranger.R . LearnerS4SVM.R . LearnerS4SurvivalRegression.R . LearnerS4XGBoost.R . LearnerSurvivalGrouping.R . LearnerSurvivalProbability.R . Logger.R . MetricS4.R . MetricS4AUC.R . MetricS4Brier.R . MetricS4ConcordanceIndex.R . MetricS4ConfusionMatrixMetrics.R . MetricS4Regression.R . ModelBuilding.R . Normalisation.R . NoveltyDetectorMain.R . NoveltyDetectorS4IsolationTree.R . NoveltyDetectorS4NoneNoveltyDetector.R . OutcomeInfo.R . PairwiseSimilarity.R . ParallelFunctions.R . ParseData.R . ParseSettings.R . PlotAUCcurves.R . PlotAll.R . PlotCalibration.R . PlotColours.R . PlotConfusionMatrix.R . PlotDecisionCurves.R . PlotFeatureRanking.R . PlotFeatureSimilarity.R . PlotGTable.R . PlotICE.R . PlotInputArguments.R . PlotKaplanMeier.R . PlotModelPerformance.R . PlotPermutationVariableImportance.R . PlotSampleClustering.R . PlotUnivariateImportance.R . PlotUtilities.R . PredictS4Methods.R . ProcessTimeUtilites.R . Random.R . RandomGrouping.R . RankBordaAggregation.R . RankMain.R . RankSimpleAggregation.R . RankStabilityAggregation.R . SocketServer.R . StringUtilities.R . TestDataCreators.R . TestFunctions.R . TrainS4Methods.R . Transformation.R . TrimUtilities.R . Utilities.R . UtilitiesS4.R . VimpMain.R . VimpS4Concordance.R . VimpS4CoreLearn.R . VimpS4Correlation.R . VimpS4MutualInformation.R . VimpS4OtherMethods.R . VimpS4Regression.R . VimpTable.R . aaa.R .  Full familiar package functions and examples
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