Other packages > Find by keyword >

famSKATRC  

Family Sequence Kernel Association Test for Rare and Common Variants
View on CRAN: Click here


Download and install famSKATRC package within the R console
Install from CRAN:
install.packages("famSKATRC")

Install from Github:
library("remotes")
install_github("cran/famSKATRC")

Install by package version:
library("remotes")
install_version("famSKATRC", "1.1.0")



Attach the package and use:
library("famSKATRC")
Maintained by
Khalid B. Kunji
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-10-12
Latest Update: 2017-11-09
Description:
FamSKAT-RC is a family-based association kernel test for both rare and common variants. This test is general and several special cases are known as other methods: famSKAT, which only focuses on rare variants in family-based data, SKAT, which focuses on rare variants in population-based data (unrelated individuals), and SKAT-RC, which focuses on both rare and common variants in population-based data. When one applies famSKAT-RC and sets the value of phi to 1, famSKAT-RC becomes famSKAT. When one applies famSKAT-RC and set the value of phi to 1 and the kinship matrix to the identity matrix, famSKAT-RC becomes SKAT. When one applies famSKAT-RC and set the kinship matrix (fullkins) to the identity matrix (and phi is not equal to 1), famSKAT-RC becomes SKAT-RC. We also include a small sample synthetic pedigree to demonstrate the method with. For more details see Saad M and Wijsman EM (2014) .
How to cite:
Khalid B. Kunji (2017). famSKATRC: Family Sequence Kernel Association Test for Rare and Common Variants. R package version 1.1.0, https://cran.r-project.org/web/packages/famSKATRC. Accessed 14 Jul. 2026.
Previous versions and publish date:
(2026-07-09 07:37), 1.0.3 (2017-10-12 13:24)
Other packages that cited famSKATRC R package
View famSKATRC citation profile
Other R packages that famSKATRC depends, imports, suggests or enhances
Complete documentation for famSKATRC
Functions, R codes and Examples using the famSKATRC R package
Some associated functions: famSKATRC-package . famSKAT_RC . process_data . sample.ped.geno . 
Some associated R codes: famSKAT_RC.R . onAttach.R . process_data.R .  Full famSKATRC package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

pps  
PPS Sampling
Functions to select samples using PPS (probability proportional to size) sampling. The package also ...
Download / Learn more Package Citations See dependency  
surveyCV  
Cross Validation Based on Survey Design
Functions to generate K-fold cross validation (CV) folds and CV test error estimates that take into ...
Download / Learn more Package Citations See dependency  
maGUI  
A Graphical User Interface for Microarray Data Analysis and Annotation
Provides a comprehensive graphical user interface for analysis of Affymetrix, Agilent, Illumina, Nim ...
Download / Learn more Package Citations See dependency  
AutoWeatherIndices  
Calculating Weather Indices
Weather indices are formed from weather variables in this package. The users can input any number of ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

27,806

R Packages

236,180

Dependencies

73,837

Author Associations

27,807

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA