Other packages > Find by keyword >

falconx  

Finding Allele-Specific Copy Number in Whole-Exome Sequencing Data
View on CRAN: Click here


Download and install falconx package within the R console
Install from CRAN:
install.packages("falconx")

Install from Github:
library("remotes")
install_github("cran/falconx")

Install by package version:
library("remotes")
install_version("falconx", "0.2")



Attach the package and use:
library("falconx")
Maintained by
Hao Chen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-04-21
Latest Update: 2017-02-24
Description:
This is a method for Allele-specific DNA Copy Number profiling for whole-Exome sequencing data. Given the allele-specific coverage and site biases at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples, as well as the site biases. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual. The implemented method is based on the paper: Chen, H., Jiang, Y., Maxwell, K., Nathanson, K. and Zhang, N. (under review). Allele-specific copy number estimation by whole Exome sequencing.
How to cite:
Hao Chen (2016). falconx: Finding Allele-Specific Copy Number in Whole-Exome Sequencing Data. R package version 0.2, https://cran.r-project.org/web/packages/falconx. Accessed 18 Sep. 2026.
Previous versions and publish date:
(2026-07-09 07:37), 0.1 (2016-04-21 22:13)
Other packages that cited falconx R package
View falconx citation profile
Other R packages that falconx depends, imports, suggests or enhances
Complete documentation for falconx
Functions, R codes and Examples using the falconx R package
Some associated functions: biasMatrix . falconx . getASCN.x . getChangepoints.x . pos . readMatrix . tauhat . view . 
Some associated R codes: Full falconx package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
downlit  
Syntax Highlighting and Automatic Linking
Syntax highlighting of R code, specifically designed for the needs of 'RMarkdown' packages like 'pk ...
Download / Learn more Package Citations See dependency  
hmeasure  
The H-Measure and Other Scalar Classification Performance Metrics
Classification performance metrics that are derived from the ROC curve of a classifier. The package ...
Download / Learn more Package Citations See dependency  
injectoR  
R Dependency Injection
R dependency injection framework. Dependency injection allows a program design to follow the depend ...
Download / Learn more Package Citations See dependency  
data360r  
Wrapper for 'TCdata360' and 'Govdata360' API
Makes it easy to engage with the Application Program Interface (API) of the 'TCdata360' and 'Govdat ...
Download / Learn more Package Citations See dependency  
eyelinker  
Import ASC Files from EyeLink Eye Trackers
Imports plain-text ASC data files from EyeLink eye trackers into (relatively) tidy data frames for ...
Download / Learn more Package Citations See dependency  

28,565

R Packages

239,283

Dependencies

75,677

Author Associations

28,566

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA