Other packages > Find by keyword >

falconx  

Finding Allele-Specific Copy Number in Whole-Exome Sequencing Data
View on CRAN: Click here


Download and install falconx package within the R console
Install from CRAN:
install.packages("falconx")

Install from Github:
library("remotes")
install_github("cran/falconx")

Install by package version:
library("remotes")
install_version("falconx", "0.2")



Attach the package and use:
library("falconx")
Maintained by
Hao Chen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-04-21
Latest Update: 2017-02-24
Description:
This is a method for Allele-specific DNA Copy Number profiling for whole-Exome sequencing data. Given the allele-specific coverage and site biases at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples, as well as the site biases. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual. The implemented method is based on the paper: Chen, H., Jiang, Y., Maxwell, K., Nathanson, K. and Zhang, N. (under review). Allele-specific copy number estimation by whole Exome sequencing.
How to cite:
Hao Chen (2016). falconx: Finding Allele-Specific Copy Number in Whole-Exome Sequencing Data. R package version 0.2, https://cran.r-project.org/web/packages/falconx. Accessed 05 Jun. 2026.
Previous versions and publish date:
0.1 (2016-04-21 22:13)
Other packages that cited falconx R package
View falconx citation profile
Other R packages that falconx depends, imports, suggests or enhances
Complete documentation for falconx
Functions, R codes and Examples using the falconx R package
Some associated functions: biasMatrix . falconx . getASCN.x . getChangepoints.x . pos . readMatrix . tauhat . view . 
Some associated R codes: Full falconx package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

ibb  
R Wrapper for Istanbul Municipality Open Data Portal
Call wrappers for Istanbul Metropolitan Municipality's Open Data Portal (Turkish: Istanbul B ...
Download / Learn more Package Citations See dependency  
crossurr  
Cross-Fitting for Doubly Robust Evaluation of High-Dimensional Surrogate Markers
Doubly robust methods for evaluating surrogate markers as outlined in: Agniel D, Hejblum BP, Thiebau ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
msm  
Multi-State Markov and Hidden Markov Models in Continuous Time
Functions for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal d ...
Download / Learn more Package Citations See dependency  
envirem  
Generation of ENVIREM Variables
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA