Other packages > Find by keyword >

falcon  

Finding Allele-Specific Copy Number in Next-Generation Sequencing Data
View on CRAN: Click here


Download and install falcon package within the R console
Install from CRAN:
install.packages("falcon")

Install from Github:
library("remotes")
install_github("cran/falcon")

Install by package version:
library("remotes")
install_version("falcon", "0.2")



Attach the package and use:
library("falcon")
Maintained by
Hao Chen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-04-24
Latest Update: 2016-04-21
Description:
This is a method for Allele-specific DNA Copy Number Profiling using Next-Generation Sequencing. Given the allele-specific coverage at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual.
How to cite:
Hao Chen (2014). falcon: Finding Allele-Specific Copy Number in Next-Generation Sequencing Data. R package version 0.2, https://cran.r-project.org/web/packages/falcon. Accessed 06 Mar. 2026.
Previous versions and publish date:
0.1 (2014-04-24 22:59)
Other packages that cited falcon R package
View falcon citation profile
Other R packages that falcon depends, imports, suggests or enhances
Complete documentation for falcon
Functions, R codes and Examples using the falcon R package
Some associated functions: falcon . getASCN . getChangepoints . pos . readMatrix . tauhat . view . 
Some associated R codes: Full falcon package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

DatabionicSwarm  
Swarm Intelligence for Self-Organized Clustering
Algorithms implementing populations of agents that interact with one another and sense their environ ...
Download / Learn more Package Citations See dependency  
EMVS  
The Expectation-Maximization Approach to Bayesian Variable Selection
An efficient expectation-maximization algorithm for fitting Bayesian spike-and-slab regularization p ...
Download / Learn more Package Citations See dependency  
mlr3viz  
Visualizations for 'mlr3'
Visualization package of the 'mlr3' ecosystem. It features plots for mlr3 objects such as tasks, le ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
lbfgs  
Limited-memory BFGS Optimization
A wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implem ...
Download / Learn more Package Citations See dependency  
solitude  
An Implementation of Isolation Forest
Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detecti ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,244

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA