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falcon  

Finding Allele-Specific Copy Number in Next-Generation Sequencing Data
View on CRAN: Click here


Download and install falcon package within the R console
Install from CRAN:
install.packages("falcon")

Install from Github:
library("remotes")
install_github("cran/falcon")

Install by package version:
library("remotes")
install_version("falcon", "0.2")



Attach the package and use:
library("falcon")
Maintained by
Hao Chen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-04-24
Latest Update: 2016-04-21
Description:
This is a method for Allele-specific DNA Copy Number Profiling using Next-Generation Sequencing. Given the allele-specific coverage at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual.
How to cite:
Hao Chen (2014). falcon: Finding Allele-Specific Copy Number in Next-Generation Sequencing Data. R package version 0.2, https://cran.r-project.org/web/packages/falcon. Accessed 08 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:37), 0.1 (2014-04-24 22:59)
Other packages that cited falcon R package
View falcon citation profile
Other R packages that falcon depends, imports, suggests or enhances
Complete documentation for falcon
Functions, R codes and Examples using the falcon R package
Some associated functions: falcon . getASCN . getChangepoints . pos . readMatrix . tauhat . view . 
Some associated R codes: Full falcon package functions and examples
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