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facilityepimath  

Analyze Mathematical Models of Healthcare Facility Transmission
View on CRAN: Click here


Download and install facilityepimath package within the R console
Install from CRAN:
install.packages("facilityepimath")

Install from Github:
library("remotes")
install_github("cran/facilityepimath")

Install by package version:
library("remotes")
install_version("facilityepimath", "0.2.3")



Attach the package and use:
library("facilityepimath")
Maintained by
Damon Toth
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-03-07
Latest Update: 2025-03-07
Description:
Calculate useful quantities for a user-defined differential equation model of infectious disease transmission among individuals in a healthcare facility. Input rates of transition between states of individuals with and without the disease-causing organism, distributions of states at facility admission, relative infectivity of transmissible states, and the facility length of stay distribution. Calculate the model equilibrium and the basic facility reproduction number, as described in Toth et al. (2025) <doi:10.1101/2025.02.21.25322698>.
How to cite:
Damon Toth (2025). facilityepimath: Analyze Mathematical Models of Healthcare Facility Transmission. R package version 0.2.3, https://cran.r-project.org/web/packages/facilityepimath. Accessed 04 Oct. 2026.
Previous versions and publish date:
(2026-09-27 17:21), 0.1.0 (2025-03-07 12:10), 0.2.1 (2025-11-07 01:10)
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Complete documentation for facilityepimath
Functions, R codes and Examples using the facilityepimath R package
Full facilityepimath package functions and examples
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