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fMRItools  

Routines for Common fMRI Processing Tasks
View on CRAN: Click here


Download and install fMRItools package within the R console
Install from CRAN:
install.packages("fMRItools")

Install from Github:
library("remotes")
install_github("cran/fMRItools")

Install by package version:
library("remotes")
install_version("fMRItools", "0.7.2")



Attach the package and use:
library("fMRItools")
Maintained by
Amanda Mejia
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-11-10
Latest Update: 2025-05-20
Description:
Supports fMRI (functional magnetic resonance imaging) analysis tasks including reading in 'CIFTI', 'GIFTI' and 'NIFTI' data, temporal filtering, nuisance regression, and aCompCor (anatomical Components Correction) (Muschelli et al. (2014) ).
How to cite:
Amanda Mejia (2022). fMRItools: Routines for Common fMRI Processing Tasks. R package version 0.7.2, https://cran.r-project.org/web/packages/fMRItools. Accessed 25 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:37), 0.1.3 (2022-11-10 19:50), 0.2.2 (2023-01-24 20:10), 0.3.1 (2023-06-29 13:50), 0.3.3 (2023-09-29 06:30), 0.4.2 (2023-11-21 16:20), 0.4.7 (2024-05-30 07:00), 0.5.3 (2025-03-04 14:50), 0.6.0 (2025-05-21 00:20)
Other packages that cited fMRItools R package
View fMRItools citation profile
Other R packages that fMRItools depends, imports, suggests or enhances
Complete documentation for fMRItools
Functions, R codes and Examples using the fMRItools R package
Some associated functions: CompCor.noise_comps . CompCor . CompCor_HCP . Mode . PCA . all_binary . all_integers . as.matrix_ifti . bandstop_filter . carpetplot . carpetplot_stack . check_req_ifti_pkg . colCenter . coordlist_to_vol . crop_vol . data_CompCor_Params . dct_bases . dct_convert . despike_3D.interpolate . despike_3D . despike_3D.qreg . detrend . dim_reduce . dual_reg . erode_mask_vol . fMRItools . fft_detrend . format_data . format_path . fsl_bptf . get_FORMAT . get_NIFTI_ROI_masks . get_kwargs . hat_matrix . infer_format_ifti . infer_format_ifti_vec . is.fname . is_1 . is_constant . is_integer . is_posNum . make_mask . match_exactly . match_input . mean_squares . merge_kwargs . noise_Params . norm_BOLD . nuisance_regression . pad_vol . pct_sig . read_nifti . rowMedians2 . scale_design_mat . scale_med . scale_timeseries . sign_flip . skew_pos . sum_neighbors_vol . sys_path . unmask_mat . unvec_mat . unvec_vol . validate_design_mat . var_decomp . vox_locations . 
Some associated R codes: CompCor.R . CompCor_HCP.R . DCT_FFT_detrending.R . PCA.R . as.matrix_ifti.R . bandstop_filter.R . carpetplot.R . despike_3D.R . dim_reduce.R . dual_reg.R . fMRItools-package.R . format_data.R . fsl_bptf.R . hat_matrix.R . infer_format_ifti.R . norm_BOLD.R . nuisance_regression.R . read_nifti.R . rox_args_docs.R . scale_matrix.R . utils_args.R . utils_checkValue.R . utils_files.R . utils_mat.R . utils_misc.R . utils_volume.R . validate_design_matrix.R . var_decomp.R .  Full fMRItools package functions and examples
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