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fMRIscrub
View on CRAN: Click
here
Download and install fMRIscrub package within the R console
Install from CRAN:
install.packages("fMRIscrub")
Install from Github:
library("remotes")
install_github("cran/fMRIscrub")
Install by package version:
library("remotes")
install_version("fMRIscrub", "0.14.5")
Attach the package and use:
library("fMRIscrub")
Maintained by
Amanda Mejia
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-08-20
Latest Update: 2023-10-25
Description:
Data-driven fMRI denoising with projection scrubbing (Pham et al
(2022) ). Also includes routines for
DVARS (Derivatives VARianceS) (Afyouni and Nichols (2018)
), motion scrubbing (Power et al
(2012) ), aCompCor (anatomical
Components Correction) (Muschelli et al (2014)
), detrending, and nuisance
regression. Projection scrubbing is also applicable to other
outlier detection tasks involving high-dimensional data.
How to cite:
Amanda Mejia (2021). fMRIscrub: Scrubbing and Other Data Cleaning Routines for fMRI. R package version 0.14.5, https://cran.r-project.org/web/packages/fMRIscrub. Accessed 21 Nov. 2024.
Previous versions and publish date:
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Other R packages that fMRIscrub depends,
imports, suggests or enhances
Complete documentation for fMRIscrub
Functions, R codes and Examples using
the fMRIscrub R package
Some associated functions: DVARS . Dat1 . Dat2 . FD . RD_impData . RD_meas . RD_univOut . SHASH_out . SHASH_to_normal . artifact_images . data_CompCor_Params . emprule_rob . fMRIscrub . flags_to_nuis_spikes . high_kurtosis . leverage . noise_Params . plot.scrub_DVARS . plot.scrub_FD . plot.scrub_projection . plot.scrub_projection_multi . plot_scrub_wrapper . projection_name . pscrub . pscrub_Params . pscrub_from_multi . pscrub_multi . rob_stabilize . rob_trend . robdist . scrub . scrub_plot . scrub_xifti . sd_hIQR . summary.scrub_DVARS . summary.scrub_FD . summary.scrub_projection .
Some associated R codes: DVARS.R . FD.R . SHASH.R . artifact_images.R . data.R . fMRIscrub-package.R . flags_to_nuis_spikes.R . high_kurtosis.R . leverage.R . plot.R . pscrub.R . pscrub_from_multi.R . pscrub_multi.R . rob_stabilize.R . robdist.R . rox_args_docs.R . scrub.R . utils.R . utils_scrub.R . Full fMRIscrub package functions and examples
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