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exmort  

All-Cause and Excess Mortality Calculator
View on CRAN: Click here


Download and install exmort package within the R console
Install from CRAN:
install.packages("exmort")

Install from Github:
library("remotes")
install_github("cran/exmort")

Install by package version:
library("remotes")
install_version("exmort", "0.1.0")



Attach the package and use:
library("exmort")
Maintained by
Shanlong Ding
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-07-30
Latest Update: 2026-07-30
Description:
An interactive 'shiny' application that estimates all-cause mortality and excess mortality from country-level weekly or monthly death counts. Users supply observed deaths and an event calendar (for example COVID-19 waves or typhoons); the app fits one or more statistical baseline models (historical average, negative binomial regression, quasi-Poisson regression, zero-inflated Poisson regression, ARIMA (autoregressive integrated moving average) and SARIMA (seasonal ARIMA) models, GAM (generalized additive model) splines, and the model of Karlinsky and Kobak (2021) <doi:10.7554/eLife.69336>) on a user-defined baseline period, projects the expected deaths into the post-baseline period, and reports excess deaths, P-scores (excess deaths as a percentage of expected deaths) and confidence limits with tables, plots and downloadable reports. Launch the application with run_app().
How to cite:
Shanlong Ding (2026). exmort: All-Cause and Excess Mortality Calculator. R package version 0.1.0, https://cran.r-project.org/web/packages/exmort. Accessed 22 Sep. 2026.
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