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exactLTRE
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Download and install exactLTRE package within the R console
Install from CRAN:
install.packages("exactLTRE")
Install from Github:
library("remotes")
install_github("cran/exactLTRE")
Install by package version:
library("remotes")
install_version("exactLTRE", "0.1.0")
Attach the package and use:
library("exactLTRE")
Maintained by
Christina Hernandez
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-11-17
Latest Update: 2022-11-17
Description:
Life Table Response Experiments (LTREs) are a method of comparative demographic analysis. The purpose is to quantify how the difference or variance in vital rates (stage-specific survival, growth, and fertility) among populations contributes to difference or variance in the population growth rate, "lambda." We provide functions for one-way fixed design and random design LTRE, using either the classical methods that have been in use for several decades, or an fANOVA-based exact method that directly calculates the impact on lambda of changes in matrix elements, for matrix elements and their interactions. The equations and descriptions for the classical methods of LTRE analysis can be found in "Matrix Population Models: Construction, Analysis, and Interpretation (2nd edition)" Caswell (2001, ISBN: 0878930965), and the fANOVA-based exact methods will be published in a forthcoming paper. We also provide some demographic functions, including generation time from Bienvenu and Legendre (2015) . For implementation of exactLTRE where all possible interactions are calculated, we use an operator matrix presented in Poelwijk, Krishna, and Ranganathan (2016) .
How to cite:
Christina Hernandez (2022). exactLTRE: An Exact Method for Life Table Response Experiment (LTRE) Analysis. R package version 0.1.0, https://cran.r-project.org/web/packages/exactLTRE. Accessed 31 Jan. 2025.
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Complete documentation for exactLTRE
Functions, R codes and Examples using
the exactLTRE R package
Some associated functions: calc_matrix_effects . calc_matrix_responses . classicalLTRE . classicalLTRE_fixed . classicalLTRE_random . collapse_mat_list . cov_matrix . exactLTRE . exactLTRE_fixed . exactLTRE_random . fundamental_matrix . generation_time . lamDiff . lamDiff_symmetric . lamVar . lifespan . make.Gmatrix . mean_matrix . r_nought . reMat . run_matrix_checks . variance_complete .
Some associated R codes: LTRE_fns.R . aux_fns.R . demographic_fns.R . Full exactLTRE package functions and examples
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