Other packages > Find by keyword >

exDE  

Extensible Differential Equations for Mosquito-Borne Pathogen Modeling
View on CRAN: Click here


Download and install exDE package within the R console
Install from CRAN:
install.packages("exDE")

Install from Github:
library("remotes")
install_github("cran/exDE")

Install by package version:
library("remotes")
install_version("exDE", "1.0.0")



Attach the package and use:
library("exDE")
Maintained by
Sean L. Wu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-11-18
Latest Update:
Description:
Provides tools to set up modular ordinary and delay differential equation models for mosquito-borne pathogens, focusing on malaria. Modular design is achieved by S3 dispatch on parameter lists for each component which is used to compute the full set of differential equations which may be solved using any of the packages for numerical simulation of differential equations in R. The methods implemented by this package are described in Wu et al. (2022) .
How to cite:
Sean L. Wu (2022). exDE: Extensible Differential Equations for Mosquito-Borne Pathogen Modeling. R package version 1.0.0, https://cran.r-project.org/web/packages/exDE. Accessed 05 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:36), 1.0.0 (2022-11-18 11:00)
Other packages that cited exDE R package
View exDE citation profile
Other R packages that exDE depends, imports, suggests or enhances
Functions, R codes and Examples using the exDE R package
Some associated functions: ExogenousForcing.null . ExogenousForcing . F_EIR.SIP . F_EIR.SIS . F_EIR.hMoI . F_EIR . F_Z.RM . F_Z . F_Z_lag.RM . F_Z_lag . F_alpha.basic . F_alpha . F_alpha.trace . F_beta.SIP . F_beta.SIS . F_beta.hMoI . F_beta . F_beta_lag.SIP . F_beta_lag.SIS . F_beta_lag.hMoI . F_beta_lag . F_eggs.RM . F_eggs . F_kappa.RM_dde . F_kappa.RM_ode . F_kappa . F_tau.RM . F_tau . F_x.SIP . F_x.SIS . F_x.hMoI . F_x . F_x_lag.SIP . F_x_lag.SIS . F_x_lag.hMoI . F_x_lag . MosquitoBehavior.RM . MosquitoBehavior . VectorControl.lemenach . VectorControl.null . VectorControl . approx_equal . dLdt.basic . dLdt . dLdt.trace . dMYZdt.RM_dde . dMYZdt.RM_ode . dMYZdt . dXdt.SIP . dXdt.SIS . dXdt.hMoI . dXdt . diag_inverse . make_Omega . make_index_L.basic . make_index_L . make_index_L.trace . make_index_MYZ.RM . make_index_MYZ . make_index_X.SIP . make_index_X.SIS . make_index_X.hMoI . make_index_X . make_indices . make_parameters_L_basic . make_parameters_L_trace . make_parameters_MYZ_RM_dde . make_parameters_MYZ_RM_ode . make_parameters_X_SIP . make_parameters_X_SIS . make_parameters_X_hMoI . make_parameters_exogenous_null . make_parameters_vc_lemenach . make_parameters_vc_null . metric_calD . metric_calR . metric_calV . metric_calZ . xDE_diffeqn . xDE_diffeqn_mosy . 
Some associated R codes: adult-RM.R . adult-interface.R . aquatic-basic.R . aquatic-interface.R . aquatic-trace.R . diffeqn.R . exogeneous-null.R . exogeneous.R . human-SIP.R . human-SIS.R . human-hMoI.R . human-interface.R . metrics.R . utils.R . vc-lemenach.R . vc-null.R . vc.R .  Full exDE package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

dhReg  
Dynamic Harmonic Regression
Building and forecasting time series data with multiple seasonality using Dynamic Harmonic Regressio ...
Download / Learn more Package Citations See dependency  
kernelPSI  
Post-Selection Inference for Nonlinear Variable Selection
Different post-selection inference strategies for kernelselection as described in kernelPSI a Post-S ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
dcov  
A Fast Implementation of Distance Covariance
Efficient methods for computing distance covariance and relevant statistics. See Sz ...
Download / Learn more Package Citations See dependency  
noisyr  
Noise Quantification in High Throughput Sequencing Output
Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are use ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA