Other packages > Find by keyword >

exDE  

Extensible Differential Equations for Mosquito-Borne Pathogen Modeling
View on CRAN: Click here


Download and install exDE package within the R console
Install from CRAN:
install.packages("exDE")

Install from Github:
library("remotes")
install_github("cran/exDE")

Install by package version:
library("remotes")
install_version("exDE", "1.0.0")



Attach the package and use:
library("exDE")
Maintained by
Sean L. Wu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-11-18
Latest Update:
Description:
Provides tools to set up modular ordinary and delay differential equation models for mosquito-borne pathogens, focusing on malaria. Modular design is achieved by S3 dispatch on parameter lists for each component which is used to compute the full set of differential equations which may be solved using any of the packages for numerical simulation of differential equations in R. The methods implemented by this package are described in Wu et al. (2022) .
How to cite:
Sean L. Wu (2022). exDE: Extensible Differential Equations for Mosquito-Borne Pathogen Modeling. R package version 1.0.0, https://cran.r-project.org/web/packages/exDE. Accessed 15 Sep. 2026.
Previous versions and publish date:
(2026-07-09 07:36), 1.0.0 (2022-11-18 11:00)
Other packages that cited exDE R package
View exDE citation profile
Other R packages that exDE depends, imports, suggests or enhances
Functions, R codes and Examples using the exDE R package
Some associated functions: ExogenousForcing.null . ExogenousForcing . F_EIR.SIP . F_EIR.SIS . F_EIR.hMoI . F_EIR . F_Z.RM . F_Z . F_Z_lag.RM . F_Z_lag . F_alpha.basic . F_alpha . F_alpha.trace . F_beta.SIP . F_beta.SIS . F_beta.hMoI . F_beta . F_beta_lag.SIP . F_beta_lag.SIS . F_beta_lag.hMoI . F_beta_lag . F_eggs.RM . F_eggs . F_kappa.RM_dde . F_kappa.RM_ode . F_kappa . F_tau.RM . F_tau . F_x.SIP . F_x.SIS . F_x.hMoI . F_x . F_x_lag.SIP . F_x_lag.SIS . F_x_lag.hMoI . F_x_lag . MosquitoBehavior.RM . MosquitoBehavior . VectorControl.lemenach . VectorControl.null . VectorControl . approx_equal . dLdt.basic . dLdt . dLdt.trace . dMYZdt.RM_dde . dMYZdt.RM_ode . dMYZdt . dXdt.SIP . dXdt.SIS . dXdt.hMoI . dXdt . diag_inverse . make_Omega . make_index_L.basic . make_index_L . make_index_L.trace . make_index_MYZ.RM . make_index_MYZ . make_index_X.SIP . make_index_X.SIS . make_index_X.hMoI . make_index_X . make_indices . make_parameters_L_basic . make_parameters_L_trace . make_parameters_MYZ_RM_dde . make_parameters_MYZ_RM_ode . make_parameters_X_SIP . make_parameters_X_SIS . make_parameters_X_hMoI . make_parameters_exogenous_null . make_parameters_vc_lemenach . make_parameters_vc_null . metric_calD . metric_calR . metric_calV . metric_calZ . xDE_diffeqn . xDE_diffeqn_mosy . 
Some associated R codes: adult-RM.R . adult-interface.R . aquatic-basic.R . aquatic-interface.R . aquatic-trace.R . diffeqn.R . exogeneous-null.R . exogeneous.R . human-SIP.R . human-SIS.R . human-hMoI.R . human-interface.R . metrics.R . utils.R . vc-lemenach.R . vc-null.R . vc.R .  Full exDE package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
CTTinShiny  
Shiny Interface for the CTT Package
A Shiny interface developed in close coordination with the CTT package, providing a GUI that guides ...
Download / Learn more Package Citations See dependency  
SiER  
Signal Extraction Approach for Sparse Multivariate Response Regression
Methods for regression with high-dimensional predictors andunivariate or maltivariate response varia ...
Download / Learn more Package Citations See dependency  
RXshrink  
Maximum Likelihood Shrinkage using Generalized Ridge or Least Angle Regression
Functions are provided to calculate and display ridge TRACE Diagnostics for a variety of alternativ ...
Download / Learn more Package Citations See dependency  
functClust  
Functional Clustering of Redundant Components of a System
Cluster together the components that make up an interactivesystem on the basis of their functional r ...
Download / Learn more Package Citations See dependency  
objectSignals  
Observer Pattern for S4
A mutable Signal object can report changes to its state, clients could register functions so that t ...
Download / Learn more Package Citations See dependency  

28,565

R Packages

239,283

Dependencies

75,677

Author Associations

28,566

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA