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exDE  

Extensible Differential Equations for Mosquito-Borne Pathogen Modeling
View on CRAN: Click here


Download and install exDE package within the R console
Install from CRAN:
install.packages("exDE")

Install from Github:
library("remotes")
install_github("cran/exDE")

Install by package version:
library("remotes")
install_version("exDE", "1.0.0")



Attach the package and use:
library("exDE")
Maintained by
Sean L. Wu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-11-18
Latest Update: 2024-01-11
Description:
Provides tools to set up modular ordinary and delay differential equation models for mosquito-borne pathogens, focusing on malaria. Modular design is achieved by S3 dispatch on parameter lists for each component which is used to compute the full set of differential equations which may be solved using any of the packages for numerical simulation of differential equations in R. The methods implemented by this package are described in Wu et al. (2022) .
How to cite:
Sean L. Wu (2022). exDE: Extensible Differential Equations for Mosquito-Borne Pathogen Modeling. R package version 1.0.0, https://cran.r-project.org/web/packages/exDE. Accessed 28 Mar. 2025.
Previous versions and publish date:
1.0.0 (2022-11-18 11:00)
Other packages that cited exDE R package
View exDE citation profile
Other R packages that exDE depends, imports, suggests or enhances
Functions, R codes and Examples using the exDE R package
Some associated functions: ExogenousForcing.null . ExogenousForcing . F_EIR.SIP . F_EIR.SIS . F_EIR.hMoI . F_EIR . F_Z.RM . F_Z . F_Z_lag.RM . F_Z_lag . F_alpha.basic . F_alpha . F_alpha.trace . F_beta.SIP . F_beta.SIS . F_beta.hMoI . F_beta . F_beta_lag.SIP . F_beta_lag.SIS . F_beta_lag.hMoI . F_beta_lag . F_eggs.RM . F_eggs . F_kappa.RM_dde . F_kappa.RM_ode . F_kappa . F_tau.RM . F_tau . F_x.SIP . F_x.SIS . F_x.hMoI . F_x . F_x_lag.SIP . F_x_lag.SIS . F_x_lag.hMoI . F_x_lag . MosquitoBehavior.RM . MosquitoBehavior . VectorControl.lemenach . VectorControl.null . VectorControl . approx_equal . dLdt.basic . dLdt . dLdt.trace . dMYZdt.RM_dde . dMYZdt.RM_ode . dMYZdt . dXdt.SIP . dXdt.SIS . dXdt.hMoI . dXdt . diag_inverse . make_Omega . make_index_L.basic . make_index_L . make_index_L.trace . make_index_MYZ.RM . make_index_MYZ . make_index_X.SIP . make_index_X.SIS . make_index_X.hMoI . make_index_X . make_indices . make_parameters_L_basic . make_parameters_L_trace . make_parameters_MYZ_RM_dde . make_parameters_MYZ_RM_ode . make_parameters_X_SIP . make_parameters_X_SIS . make_parameters_X_hMoI . make_parameters_exogenous_null . make_parameters_vc_lemenach . make_parameters_vc_null . metric_calD . metric_calR . metric_calV . metric_calZ . xDE_diffeqn . xDE_diffeqn_mosy . 
Some associated R codes: adult-RM.R . adult-interface.R . aquatic-basic.R . aquatic-interface.R . aquatic-trace.R . diffeqn.R . exogeneous-null.R . exogeneous.R . human-SIP.R . human-SIS.R . human-hMoI.R . human-interface.R . metrics.R . utils.R . vc-lemenach.R . vc-null.R . vc.R .  Full exDE package functions and examples
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