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epos
View on CRAN: Click
here
Download and install epos package within the R console
Install from CRAN:
install.packages("epos")
Install from Github:
library("remotes")
install_github("cran/epos")
Install by package version:
library("remotes")
install_version("epos", "1.1")
Attach the package and use:
library("epos")
Maintained by
Bernd Mueller
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-10-08
Latest Update: 2021-02-20
Description:
Analysis and visualization of similarities between epilepsy ontologies based on text mining results by comparing ranked lists of co-occurring drug terms in the BioASQ corpus. The ranked result lists of neurological drug terms co-occurring with terms from the epilepsy ontologies EpSO, ESSO, EPILONT, EPISEM and FENICS undergo further analysis. The source data to create the ranked lists of drug names is produced using the text mining workflows described in Mueller, Bernd and Hagelstein, Alexandra (2016) , Mueller, Bernd et al. (2017) , Mueller, Bernd and Rebholz-Schuhmann, Dietrich (2020) , and Mueller, Bernd et al. (2022) .
How to cite:
Bernd Mueller (2018). epos: Epilepsy Ontologies' Similarities. R package version 1.1, https://cran.r-project.org/web/packages/epos
Previous versions and publish date:
Other packages that cited epos R package
View epos citation profile
Other R packages that epos depends,
imports, suggests or enhances
Functions, R codes and Examples using
the epos R package
Some associated functions: calcCosine . calcDSEA . calcDice . calcEnrichment . calcJaccard . cosine . createBaseTable . createDashVectorForATC . createJaccardPlotDBMeSH . createJaccardPlotMeSHFive . createNeuroTable . createTanimotoBaseline . dice . doFullPlot . drawVenn4 . drawVenn4Doc . drawVenn4DrugDoc . drawVenn4Syn . drawVenn5 . drawVenn5Doc . drawVenn5DrugDoc . drawVenn5Syn . drawVennGrid . filterApprovedDrugs . filterNeuroDrugs . genDictListFromRawFreq . getRefAll . getTermMatrix . jaccard . plotDSEA . plotEnrichment . printTop10Drugs . rawDrugNamesCoOcEPILONT . rawDrugNamesCoOcEPISEM . rawDrugNamesCoOcESSO . rawDrugNamesCoOcEpSO . rawDrugNamesCoOcFENICS . readAtcMapIntoHashMapAtcCodesAtcNames . readAtcMapIntoHashMapDrugNamesAtcCodes . readSecondLevelATC . sortTableByRefMatches .
Some associated R codes: calcEnrichment.R . calcSimilarities.R . data.R . doThePlotDrugVectors.R . drawVennDiagramms.R . gridArrangeCall.R . main.R . mongoReader.R . processATC.R . writeNeuroTable.R . Full epos package functions and examples
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