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epoc  

Endogenous Perturbation Analysis of Cancer
View on CRAN: Click here


Download and install epoc package within the R console
Install from CRAN:
install.packages("epoc")

Install from Github:
library("remotes")
install_github("cran/epoc")

Install by package version:
library("remotes")
install_version("epoc", "0.2.6-1.1")



Attach the package and use:
library("epoc")
Maintained by
Tobias Abenius
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2011-04-05
Latest Update: 2019-08-26
Description:
Estimates sparse matrices A or G using fast lasso regression from mRNA transcript levels Y and CNA profiles U. Two models are provided, EPoC A where AY + U + R = 0 and EPoC G where Y = GU + E, the matrices R and E are so far treated as noise. For details see the manual page of 'lassoshooting' and the article Rebecka J
How to cite:
Tobias Abenius (2011). epoc: Endogenous Perturbation Analysis of Cancer. R package version 0.2.6-1.1, https://cran.r-project.org/web/packages/epoc. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.2.2-2 (2011-04-05 16:47), 0.2.3-1 (2011-04-06 12:12), 0.2.3-2 (2011-04-06 20:13), 0.2.3-3 (2011-04-07 15:15), 0.2.3-4 (2011-04-08 15:50), 0.2.4-4 (2011-04-24 08:07), 0.2.4-6 (2011-04-26 17:30), 0.2.4-7 (2011-05-19 12:05), 0.2.4-9 (2011-06-17 08:45), 0.2.4-12 (2011-10-19 12:33), 0.2.4-13 (2011-10-26 19:59), 0.2.4-14 (2012-10-05 14:42), 0.2.5-1 (2013-08-26 17:52), 0.2.6-1.1 (2019-08-26 09:55), 0.2.6-1 (2018-11-29 13:10)
Other packages that cited epoc R package
View epoc citation profile
Other R packages that epoc depends, imports, suggests or enhances
Complete documentation for epoc
Functions, R codes and Examples using the epoc R package
Some associated functions: epoc.bootstrap . epoc . epoc.survival . epoc.validation . plapply . plot.EPoC.validation . plot.modelsel . synth . 
Some associated R codes: epoc.R . zzz.R .  Full epoc package functions and examples
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