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epitopeR  

Predict Peptide-MHC Binding
View on CRAN: Click here


Download and install epitopeR package within the R console
Install from CRAN:
install.packages("epitopeR")

Install from Github:
library("remotes")
install_github("cran/epitopeR")

Install by package version:
library("remotes")
install_version("epitopeR", "1.0.0")



Attach the package and use:
library("epitopeR")
Maintained by
Joan Zhang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-02-15
Latest Update: 2023-06-11
Description:
A suite of tools to predict peptide MHC (major histocompatibility complex) presentation in the context of both human and mouse. Polymorphic peptides between self and foreign proteins are identified. The ability of peptides to bind self MHC is assessed and scored. Based on half maximal inhibitory concentration as queried through the immune epitope database API using user defined methods, the foreign peptides most likely to be presented are output along with their predicted binding strength, amino acid position, the protein from which each peptide was derived, and the presenting allele. "References:" Vita R, Mahajan S, Overton JA, Dhanda SK, Martini S, Cantrell JR, Wheeler DK, Sette A, Peters B. .
How to cite:
Joan Zhang (2023). epitopeR: Predict Peptide-MHC Binding. R package version 1.0.0, https://cran.r-project.org/web/packages/epitopeR. Accessed 21 Nov. 2024.
Previous versions and publish date:
1.0.0 (2023-02-15 13:50)
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Functions, R codes and Examples using the epitopeR R package
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