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epistasis  

Detecting Epistatic Selection with Partially Observed Genotype Data
View on CRAN: Click here


Download and install epistasis package within the R console
Install from CRAN:
install.packages("epistasis")

Install from Github:
library("remotes")
install_github("cran/epistasis")

Install by package version:
library("remotes")
install_version("epistasis", "0.0.1-1")



Attach the package and use:
library("epistasis")
Maintained by
Pariya Behrouzi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-11-07
Latest Update: 2023-08-11
Description:
An efficient multi-core package to reconstruct an underlying network of genomic signatures of high-dimensional epistatic selection from partially observed genotype data. The phenotype that we consider is viability. The network captures the conditional dependent short- and long-range linkage disequilibrium structure of genomes and thus reveals aberrant marker-marker associations that are due to epistatic selection. We target on high-dimensional genotype data where number of variables (markers) is larger than number of sample sizes (p >> n). The computations is memory-optimized using the sparse matrix output.
How to cite:
Pariya Behrouzi (2016). epistasis: Detecting Epistatic Selection with Partially Observed Genotype Data. R package version 0.0.1-1, https://cran.r-project.org/web/packages/epistasis
Previous versions and publish date:
0.0.0-1 (2016-11-07 17:22), 0.0.1-1 (2016-11-23 09:38)
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