Other packages > Find by keyword >

epistasis  

Detecting Epistatic Selection with Partially Observed Genotype Data
View on CRAN: Click here


Download and install epistasis package within the R console
Install from CRAN:
install.packages("epistasis")

Install from Github:
library("remotes")
install_github("cran/epistasis")

Install by package version:
library("remotes")
install_version("epistasis", "0.0.1-1")



Attach the package and use:
library("epistasis")
Maintained by
Pariya Behrouzi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-11-07
Latest Update: 2023-08-11
Description:
An efficient multi-core package to reconstruct an underlying network of genomic signatures of high-dimensional epistatic selection from partially observed genotype data. The phenotype that we consider is viability. The network captures the conditional dependent short- and long-range linkage disequilibrium structure of genomes and thus reveals aberrant marker-marker associations that are due to epistatic selection. We target on high-dimensional genotype data where number of variables (markers) is larger than number of sample sizes (p >> n). The computations is memory-optimized using the sparse matrix output.
How to cite:
Pariya Behrouzi (2016). epistasis: Detecting Epistatic Selection with Partially Observed Genotype Data. R package version 0.0.1-1, https://cran.r-project.org/web/packages/epistasis. Accessed 05 Jan. 2025.
Previous versions and publish date:
0.0.0-1 (2016-11-07 17:22), 0.0.1-1 (2016-11-23 09:38)
Other packages that cited epistasis R package
View epistasis citation profile
Other R packages that epistasis depends, imports, suggests or enhances
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

GFisher  
Generalized Fisher's Combination Tests Under Dependence
Accurate and computationally efficient p-value calculation methods for a general family of Fisher ty ...
Download / Learn more Package Citations See dependency  
uclust  
Clustering and Classification Inference with U-Statistics
Clustering and classification inference for high dimension low sample size (HDLSS) data with U-stati ...
Download / Learn more Package Citations See dependency  
bama  
High Dimensional Bayesian Mediation Analysis
Perform mediation analysis in the presence of high-dimensional mediators based on the potential out ...
Download / Learn more Package Citations See dependency  
ENMeval  
Automated Tuning and Evaluations of Ecological Niche Models
Runs ecological niche models over all combinations of user-defined settings (i.e., tuning), performs ...
Download / Learn more Package Citations See dependency  
interplot  
Plot the Effects of Variables in Interaction Terms
Plots the conditional coefficients ("marginal effects") of variables included in multiplicative int ...
Download / Learn more Package Citations See dependency  
Maintainer: Yue Hu (view profile)
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

23,440

R Packages

202,297

Dependencies

63,567

Author Associations

23,434

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA