Other packages > Find by keyword >

episcan  

Scan Pairwise Epistasis
View on CRAN: Click here


Download and install episcan package within the R console
Install from CRAN:
install.packages("episcan")

Install from Github:
library("remotes")
install_github("cran/episcan")

Install by package version:
library("remotes")
install_version("episcan", "0.0.1")



Attach the package and use:
library("episcan")
Maintained by
Beibei Jiang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-09-14
Latest Update:
Description:
Searching genomic interactions with linear/logistic regression in a high-dimensional dataset is a time-consuming task. This package provides some efficient ways to scan epistasis in genome-wide interaction studies (GWIS). Both case-control status (binary outcome) and quantitative phenotype (continuous outcome) are supported (the main references: 1. Kam-Thong, T., D. Czamara, K. Tsuda, K. Borgwardt, C. M. Lewis, A. Erhardt-Lehmann, B. Hemmer, et al. (2011). . 2. Kam-Thong, T., B. P
How to cite:
Beibei Jiang (2018). episcan: Scan Pairwise Epistasis. R package version 0.0.1, https://cran.r-project.org/web/packages/episcan. Accessed 27 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:36), 0.0.1 (2018-09-15 01:02)
Other packages that cited episcan R package
View episcan citation profile
Other R packages that episcan depends, imports, suggests or enhances
Complete documentation for episcan
Functions, R codes and Examples using the episcan R package
Some associated functions: WriteSnpPairs . WriteSnpPairs_sym . ZtoP . checkchunksize . epiHSIC . epiHSIC1geno . epiHSIC2genos . epiblaster1geno . epiblaster2genos . episcan . getcor . ithChunk . 
Some associated R codes: EPIBLASTER.R . FUNCTIONS.R . epiHSIC.R . episcan.R .  Full episcan package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

lmmpar  
Parallel Linear Mixed Model
Embarrassingly Parallel Linear Mixed Model calculations spread across local cores which repeat until ...
Download / Learn more Package Citations See dependency  
IntervalQuestionStat  
Tools to Deal with Interval-Valued Responses in Questionnaires
A user-friendly toolbox for doing the statistical analysis of interval-valued responses in question ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
BetterReg  
Better Statistics for OLS and Binomial Logistic Regression
Provides squared semi partial correlations, tolerance, Mahalanobis, Likelihood Ratio Chi Square, and ...
Download / Learn more Package Citations See dependency  
Bodi  
Boosting Diversity in Regression Ensembles
A gradient boosting-based algorithm by incorporating a diversity term to guide the gradient boosting ...
Download / Learn more Package Citations See dependency  
ROI.plugin.qpoases  
'qpOASES' Plugin for the 'R' Optimization Infrastructure
Enhances the 'R' Optimization Infrastructure ('ROI') package with the quadratic solver 'qpOASES'. M ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA