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epiphy
View on CRAN: Click
here
Download and install epiphy package within the R console
Install from CRAN:
install.packages("epiphy")
Install from Github:
library("remotes")
install_github("cran/epiphy")
Install by package version:
library("remotes")
install_version("epiphy", "0.5.0")
Attach the package and use:
library("epiphy")
Maintained by
Christophe Gigot
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-05-24
Latest Update: 2023-11-16
Description:
A toolbox to make it easy to analyze plant disease epidemics. It
provides a common framework for plant disease intensity data recorded over
time and/or space. Implemented statistical methods are currently mainly
focused on spatial pattern analysis (e.g., aggregation indices, Taylor and
binary power laws, distribution fitting, SADIE and 'mapcomp' methods). See
Laurence V. Madden, Gareth Hughes, Franck van den Bosch (2007)
for further information on these methods.
Several data sets that were mainly published in plant disease epidemiology
literature are also included in this package.
How to cite:
Christophe Gigot (2018). epiphy: Analysis of Plant Disease Epidemics. R package version 0.5.0, https://cran.r-project.org/web/packages/epiphy
Previous versions and publish date:
0.3.4 (2018-05-24 15:37)
Other packages that cited epiphy R package
View epiphy citation profile
Other R packages that epiphy depends,
imports, suggests or enhances
Functions, R codes and Examples using
the epiphy R package
Some associated functions: BetaBinomial . a2a . agg_index . aphids . arthropods . as.data.frame.intensity . calpha.test . chisq.test . citrus_ctv . clump . codling_moths . coef.smle . dogwood_anthracnose . epiphy . fit_two_distr . hop_viruses . indAndSub . intensity . is.intensity . link . logLik.smle . mapcomp . mapped_var . mapping . offspring_survival . onion_bacterial_blight . power_law . pyrethrum_ray_blight . sadie . simulated_epidemics . smle . smle_wrappers . spatial_hier . split.intensity . threshold . tobacco_viruses . tomato_tswv . vcov.smle . z.test .
Some associated R codes: RcppExports.R . betabinom.R . data.R . distr-fitting.R . epiphy.R . indices.R . intensity-classes.R . mapcomp.R . mle-factory.R . power-law.R . sadie.R . spatial-hier.R . utils.R . Full epiphy package functions and examples
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