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epimdr  

Functions and Data for "Epidemics: Models and Data in R"
View on CRAN: Click here


Download and install epimdr package within the R console
Install from CRAN:
install.packages("epimdr")

Install from Github:
library("remotes")
install_github("cran/epimdr")

Install by package version:
library("remotes")
install_version("epimdr", "0.6-5")



Attach the package and use:
library("epimdr")
Maintained by
Ottar N. Bjornstad
[Scholar Profile | Author Map]
First Published: 2018-10-26
Latest Update: 2020-01-25
Description:
Functions, data sets and shiny apps for "Epidemics: Models and Data in R" by Ottar N. Bjornstad (ISBN 978-3-319-97487-3) . The package contains functions to study the S(E)IR model, spatial and age-structured SIR models; time-series SIR and chain-binomial stochastic models; catalytic disease models; coupled map lattice models of spatial transmission and network models for social spread of infection. The package is also an advanced quantitative companion to the coursera Epidemics Massive Online Open Course .
How to cite:
Ottar N. Bjornstad (2018). epimdr: Functions and Data for "Epidemics: Models and Data in R". R package version 0.6-5, https://cran.r-project.org/web/packages/epimdr. Accessed 30 Apr. 2025.
Previous versions and publish date:
0.6-1 (2018-10-26 16:50), 0.6-2 (2019-01-17 22:20), 0.6-3 (2019-05-03 23:20), 0.6-4 (2019-08-26 06:20)
Other packages that cited epimdr R package
View epimdr citation profile
Other R packages that epimdr depends, imports, suggests or enhances
Complete documentation for epimdr
Functions, R codes and Examples using the epimdr R package
Some associated functions: BarabasiAlbert . Icelandflu . May.app . NB . NetworkSIR . SEIR.app . SEIRS.app . SH9 . SIR.app . SimTsir . SimTsir2 . TSIR.app . TSIRllyap . TSIRlyap . WattsStrogatz . black . burnett . ccs . chainSIR . cholera . coyne . dalziel . ebola . ferrari . filipendula . fiv . flowField . flu . gillespie . gm . gonnet . gra . integrandpc . litter . llik.cb . llik.pc . magono . meas . mossong . niamey . niamey_daily . orv.app . pagiard . paili . palymes . pameasle . pertcop . peru . plot.cm . plot.netSIR . r0fun . rabbit . rabies . retrospec . ringlattice . seirmod . seirmod2 . silene2 . sim.cb . siragemod . sirmod . sirwmod . sivmod . summary.cm . summary.netSIR . tau . tydiphtheria . tymeasles . tyscarlet . tywhooping . usflu . 
Some associated R codes: data.R . flowField.R . rfuncs.R .  Full epimdr package functions and examples
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