Other packages > Find by keyword >

epigrowthfit  

Nonlinear Mixed Effects Models of Epidemic Growth
View on CRAN: Click here


Download and install epigrowthfit package within the R console
Install from CRAN:
install.packages("epigrowthfit")

Install from Github:
library("remotes")
install_github("cran/epigrowthfit")

Install by package version:
library("remotes")
install_version("epigrowthfit", "0.15.4")



Attach the package and use:
library("epigrowthfit")
Maintained by
Mikael Jagan
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-04-25
Latest Update: 2025-02-19
Description:
Maximum likelihood estimation of nonlinear mixed effects models of epidemic growth using Template Model Builder ('TMB').Enables joint estimation for collections of disease incidence time series, including time series that describe multiple epidemic waves. Supports a set of widely used phenomenological models: exponential, logistic, Richards (generalized logistic), subexponential, and Gompertz.Provides methods for interrogating model objects and several auxiliary functions, including one for computing basic reproduction numbers from fitted values of the initial exponential growth rate. Preliminary versions of this software were applied in Ma et al. (2014) <doi:10.1007/s11538-013-9918-2> and in Earn et al. (2020) <doi:10.1073/pnas.2004904117>.
How to cite:
Mikael Jagan (2024). epigrowthfit: Nonlinear Mixed Effects Models of Epidemic Growth. R package version 0.15.4, https://cran.r-project.org/web/packages/epigrowthfit. Accessed 25 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:36), 0.15.2 (2024-04-25 18:20), 0.15.3 (2024-06-18 06:00)
Other packages that cited epigrowthfit R package
View epigrowthfit citation profile
Other R packages that epigrowthfit depends, imports, suggests or enhances
Complete documentation for epigrowthfit
Functions, R codes and Examples using the epigrowthfit R package
Full epigrowthfit package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
RcmdrPlugin.aRnova  
R Commander Plug-in for Repeated-Measures ANOVA
R Commander plug-in for repeated-measures and mixed-design ('split-plot') ANOVA. It adds a new men ...
Download / Learn more Package Citations See dependency  
imputeTS  
Time Series Missing Value Imputation
Imputation (replacement) of missing values in univariate time series. Offers several imputation fu ...
Download / Learn more Package Citations See dependency  
CTT  
Classical Test Theory Functions
A collection of common test and item analyses from a classical test theory (CTT) framework. Analyses ...
Download / Learn more Package Citations See dependency  
guardianapi  
Access 'The Guardian' Newspaper Open Data API
Access to 'The Guardian' newspaper's open API , containing ...
Download / Learn more Package Citations See dependency  
nlstools  
Tools for Nonlinear Regression Analysis
Several tools for assessing the quality of fit of a gaussian nonlinear model are provided. ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA