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epiR

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Tools for the Analysis of Epidemiological Data

View on CRAN: Click here

Download and install epiR package within the R console
Install from CRAN:

 install.packages("epiR")

Install from Github:

 library("remotes")

                        install_github("cran/epiR")

Install by package version:

 library("remotes")

                        install_version("epiR", "2.0.78")

Attach the package and use:

 library("epiR")

Maintained by
Mark Stevenson
[Scholar Profile | Author Map]

All associated links for this package

First Published: 2008-03-24

Latest Update: 2023-08-15

Description:

Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.

How to cite:

Mark Stevenson (2008). epiR: Tools for the Analysis of Epidemiological Data. R package version 2.0.78, https://cran.r-project.org/web/packages/epiR. Accessed 22 Dec. 2024.

Previous versions and publish date:

0.9-3 (2008-03-24 22:33), 0.9-4 (2008-04-07 08:45), 0.9-5 (2008-04-29 08:49), 0.9-6 (2008-05-08 09:13), 0.9-8 (2008-07-09 11:16), 0.9-9 (2008-08-18 19:55), 0.9-10 (2008-08-21 18:50), 0.9-11 (2008-10-08 09:11), 0.9-14 (2008-12-19 08:51), 0.9-15 (2009-03-31 08:34), 0.9-16 (2009-05-24 10:36), 0.9-17 (2009-06-02 19:28), 0.9-18 (2009-06-25 09:25), 0.9-19 (2009-08-10 08:34), 0.9-22 (2009-12-09 09:53), 0.9-26 (2010-07-24 22:15), 0.9-27 (2010-09-20 09:40), 0.9-32 (2011-05-10 06:21), 0.9-35 (2012-01-11 08:02), 0.9-36 (2012-01-24 07:50), 0.9-38 (2012-02-02 08:41), 0.9-40 (2012-04-05 07:56), 0.9-43 (2012-05-29 08:37), 0.9-45 (2012-12-05 07:57), 0.9-46 (2013-03-17 07:41), 0.9-48 (2013-04-08 07:22), 0.9-51 (2013-11-20 14:04), 0.9-53 (2014-01-06 07:18), 0.9-54 (2014-01-08 09:21), 0.9-56 (2014-01-27 15:31), 0.9-57 (2014-02-04 22:44), 0.9-58 (2014-04-28 15:20), 0.9-59 (2014-08-06 15:44), 0.9-61 (2014-12-17 14:56), 0.9-62 (2015-01-08 12:20), 0.9-69 (2015-09-27 17:15), 0.9-74 (2016-02-25 23:38), 0.9-76 (2016-05-04 09:00), 0.9-77 (2016-05-14 00:01), 0.9-79 (2016-07-18 14:10), 0.9-82 (2017-04-07 13:04), 0.9-87 (2017-07-01 00:15), 0.9-91 (2017-10-27 15:07), 0.9-93 (2017-12-11 13:08), 0.9-96 (2018-05-04 06:14), 0.9-97 (2018-08-22 07:00), 0.9-99 (2018-11-06 13:30), 1.0-2 (2019-05-22 09:20), 1.0-4 (2019-08-23 06:50), 1.0-10 (2019-11-24 23:40), 1.0-11 (2020-01-24 00:00), 1.0-13 (2020-02-27 12:20), 1.0-14 (2020-03-13 08:10), 1.0-15 (2020-06-14 16:30), 2.0.17 (2020-12-04 14:50), 2.0.19 (2021-01-12 10:30), 2.0.26 (2021-06-01 09:40), 2.0.31 (2021-07-19 12:20), 2.0.33 (2021-07-30 07:00), 2.0.35 (2021-09-16 07:30), 2.0.36 (2021-09-26 06:40), 2.0.38 (2021-10-11 09:40), 2.0.39 (2021-11-11 00:00), 2.0.40 (2021-12-16 04:30), 2.0.41 (2022-01-07 13:32), 2.0.43 (2022-02-17 01:20), 2.0.44 (2022-03-22 01:30), 2.0.46 (2022-04-01 01:10), 2.0.48 (2022-05-25 11:10), 2.0.50 (2022-07-01 13:00), 2.0.52 (2022-09-25 17:10), 2.0.53 (2022-10-31 09:10), 2.0.54 (2022-12-13 01:40), 2.0.56 (2023-01-15 11:20), 2.0.57 (2023-02-07 00:12), 2.0.58 (2023-03-08 00:40), 2.0.59 (2023-03-28 09:20), 2.0.60 (2023-04-05 14:13), 2.0.61 (2023-05-18 11:40), 2.0.62 (2023-07-01 09:20), 2.0.63 (2023-08-15 11:20), 2.0.65 (2023-09-28 11:10), 2.0.66 (2023-11-20 09:30), 2.0.67 (2024-01-09 07:10), 2.0.68 (2024-02-18 23:30), 2.0.70 (2024-03-11 16:00), 2.0.73 (2024-04-10 04:40), 2.0.74 (2024-04-27 14:30), 2.0.75 (2024-06-17 10:50), 2.0.76 (2024-09-16 00:20), 2.0.77 (2024-11-19 08:20)

Other packages that cited epiR R package

View epiR citation profile

Other R packages that epiR depends, imports, suggests or enhances

View epiR dependency map

Complete documentation for epiR

View documentation PDF

Functions, R codes and Examples using the epiR R package

Some associated functions: epi.2by2 . epi.RtoBUGS . epi.SClip . epi.about . epi.asc . epi.betabuster . epi.blcm.paras . epi.bohning . epi.ccc . epi.conf . epi.convgrid . epi.cp . epi.cpresids . epi.descriptives . epi.dgamma . epi.directadj . epi.dms . epi.dsl . epi.edr . epi.empbayes . epi.epidural . epi.herdtest . epi.incin . epi.indirectadj . epi.insthaz . epi.interaction . epi.iv . epi.kappa . epi.ltd . epi.mh . epi.nomogram . epi.occc . epi.offset . epi.pooled . epi.popsize . epi.prcc . epi.prev . epi.psi . epi.realrisk . epi.smd . epi.smr . epi.sscc . epi.ssclus1estb . epi.ssclus1estc . epi.ssclus2estb . epi.ssclus2estc . epi.sscohortc . epi.sscohortt . epi.sscompb . epi.sscompc . epi.sscomps . epi.ssdetect . epi.ssdxsesp . epi.ssdxtest . epi.ssequb . epi.ssequc . epi.ssninfb . epi.ssninfc . epi.sssimpleestb . epi.sssimpleestc . epi.ssstrataestb . epi.ssstrataestc . epi.sssupb . epi.sssupc . epi.ssxsectn . epi.tests . rsu.adjrisk . rsu.dxtest . rsu.epinf . rsu.pfree.equ . rsu.pfree.rs . rsu.pstar . rsu.sep.cens . rsu.sep . rsu.sep.pass . rsu.sep.rb . rsu.sep.rb1rf . rsu.sep.rb2rf . rsu.sep.rb2st . rsu.sep.rbvarse . rsu.sep.rs . rsu.sep.rs2st . rsu.sep.rsfreecalc . rsu.sep.rsmult . rsu.sep.rspool . rsu.sep.rsvarse . rsu.spp.rs . rsu.sspfree.rs . rsu.sssep.rb2st1rf . rsu.sssep.rb2st2rf . rsu.sssep.rbmrg . rsu.sssep.rbsrg . rsu.sssep.rs . rsu.sssep.rs2st . rsu.sssep.rsfreecalc . rsu.sssep.rspool .
Some associated R codes: epi.2by2.R . epi.RtoBUGS.R . epi.about.R . epi.asc.R . epi.betabuster.R . epi.bohning.R . epi.ccc.R . epi.conf.R . epi.convgrid.R . epi.cp.R . epi.cpresids.R . epi.descriptives.R . epi.dgamma.R . epi.directadj.R . epi.dms.R . epi.dsl.R . epi.edr.R . epi.empbayes.R . epi.herdtest.R . epi.indirectadj.R . epi.insthaz.R . epi.interaction.R . epi.iv.R . epi.kappa.R . epi.ltd.R . epi.mh.R . epi.nomogram.R . epi.occc.R . epi.offset.R . epi.pooled.R . epi.popsize.R . epi.prcc.R . epi.prev.R . epi.smd.R . epi.smr.R . epi.sscc.R . epi.ssclus1estb.R . epi.ssclus1estc.R . epi.ssclus2estb.R . epi.ssclus2estc.R . epi.sscohortc.R . epi.sscohortt.R . epi.sscompb.R . epi.sscompc.R . epi.sscomps.R . epi.ssdetect.R . epi.ssdxsesp.R . epi.ssdxtest.R . epi.ssequb.R . epi.ssequc.R . epi.ssninfb.R . epi.ssninfc.R . epi.sssimpleestb.R . epi.sssimpleestc.R . epi.ssstrataestb.R . epi.ssstrataestc.R . epi.sssupb.R . epi.sssupc.R . epi.ssxsectn.R . epi.tests.R . globals.R . rsu.adjrisk.R . rsu.dxtest.R . rsu.epinf.R . rsu.pfree.equ.R . rsu.pfree.rs.R . rsu.pstar.R . rsu.sep.R . rsu.sep.cens.R . rsu.sep.pass.R . rsu.sep.rb.R . rsu.sep.rb1rf.R . rsu.sep.rb2rf.R . rsu.sep.rs.R . rsu.sep.rs2st.R . rsu.sep.rsfreecalc.R . rsu.sep.rsmult.R . rsu.sep.rspool.R . rsu.sep.rsvarse.R . rsu.spp.rs.R . rsu.sspfree.rs.R . rsu.sssep.rb2st1rf.R . rsu.sssep.rb2st2rf.R . rsu.sssep.rbmrg.R . rsu.sssep.rbsrg.R . rsu.sssep.rs.R . rsu.sssep.rs2st.R . rsu.sssep.rsfreecalc.R . rsu.sssep.rspool.R . zARscore.R . zARwald.R . zMHRD.GR.R . zMHRD.Sato.R . zMHRD.Sato0.R . zORcfield.R . zORml.R . zORscore.R . zORwald.R . zRRscore.R . zRRtaylor.R . zRRwald.R . zagresti.R . zclopperpearson.R . zdisc.prior.R . zexact.R . zfleiss.R . zget.cp.R . zincrate.R . zincrisk.R . zjeffreys.R . zlimit.R . zn.binom.R . zn.hypergeo.R . zrsu.rspfree.1.R . zsep.binom.R . zsep.binom.imperfect.R . zsep.hypergeo.R . zsep.pfree.R . zsph.binom.R . zwilson.R . zz2stat.R . zzz.R . Full epiR package functions and examples

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