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enveomics.R  

Various Utilities for Microbial Genomics and Metagenomics
View on CRAN: Click here


Download and install enveomics.R package within the R console
Install from CRAN:
install.packages("enveomics.R")

Install from Github:
library("remotes")
install_github("cran/enveomics.R")

Install by package version:
library("remotes")
install_version("enveomics.R", "1.9.1")



Attach the package and use:
library("enveomics.R")
Maintained by
Luis M. Rodriguez-R
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-01-12
Latest Update: 2024-01-30
Description:
A collection of functions for microbial ecology and other applications of genomics and metagenomics. Companion package for the Enveomics Collection (Rodriguez-R, L.M. and Konstantinidis, K.T., 2016 ).
How to cite:
Luis M. Rodriguez-R (2016). enveomics.R: Various Utilities for Microbial Genomics and Metagenomics. R package version 1.9.1, https://cran.r-project.org/web/packages/enveomics.R
Previous versions and publish date:
1.0.0 (2016-01-12 14:19), 1.0.1 (2016-03-07 01:09), 1.1.0 (2016-05-14 23:15), 1.1.1 (2016-08-16 19:50), 1.1.4 (2017-03-13 19:25), 1.1.5 (2017-04-04 08:10), 1.1.6 (2017-08-29 21:34), 1.1.7 (2018-02-13 21:20), 1.2.0 (2018-02-21 22:55), 1.2.1 (2018-03-29 19:35), 1.3.2 (2018-08-09 18:40), 1.3.3 (2018-08-27 17:54), 1.3 (2018-04-17 07:16), 1.4.1 (2018-09-11 00:30), 1.4.2 (2018-11-13 06:50), 1.4.3 (2019-01-06 23:00), 1.4.4 (2019-02-05 19:53), 1.5.0 (2019-10-27 10:10), 1.6.0 (2019-11-12 06:40), 1.7.0 (2019-11-20 00:20), 1.8.0 (2020-04-11 06:40), 1.9.0 (2022-04-13 12:12)
Other packages that cited enveomics.R R package
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Other R packages that enveomics.R depends, imports, suggests or enhances
Functions, R codes and Examples using the enveomics.R R package
Some associated functions: cash-enve.GrowthCurve-method . cash-enve.RecPlot2-method . cash-enve.RecPlot2.Peak-method . enve.GrowthCurve-class . enve.RecPlot2-class . enve.RecPlot2.Peak-class . enve.TRIBS-class . enve.TRIBS.merge . enve.TRIBStest-class . enve.__prune.iter . enve.__prune.reduce . enve.__tribs . enve.barplot . enve.cliopts . enve.col.alpha . enve.col2alpha . enve.df2dist.group . enve.df2dist.list . enve.df2dist . enve.growthcurve . enve.prefscore . enve.prune.dist . enve.recplot . enve.recplot2.ANIr . enve.recplot2.__counts . enve.recplot2.__peakHist . enve.recplot2.__whichClosestPeak . enve.recplot2.changeCutoff . enve.recplot2.compareIdentities . enve.recplot2.coordinates . enve.recplot2.corePeak . enve.recplot2.extractWindows . enve.recplot2.findPeaks.__em_e . enve.recplot2.findPeaks.__em_m . enve.recplot2.findPeaks.__emauto_one . enve.recplot2.findPeaks.__mow_one . enve.recplot2.findPeaks.__mower . enve.recplot2.findPeaks.em . enve.recplot2.findPeaks.emauto . enve.recplot2.findPeaks.mower . enve.recplot2.findPeaks . enve.recplot2 . enve.recplot2.seqdepth . enve.recplot2.windowDepthThreshold . enve.selvector . enve.tribs . enve.tribs.test . enve.truncate . growth.curves . phyla.counts . plot.enve.GrowthCurve . plot.enve.RecPlot2 . plot.enve.TRIBS . plot.enve.TRIBStest . summary.enve.GrowthCurve . summary.enve.TRIBS . summary.enve.TRIBStest . 
Some associated R codes: autoprune.R . barplot.R . cliopts.R . df2dist.R . growthcurve.R . prefscore.R . recplot.R . recplot2.R . tribs.R . utils.R .  Full enveomics.R package functions and examples
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