R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
emba
View on CRAN: Click
here
Download and install emba package within the R console
Install from CRAN:
install.packages("emba")
Install from Github:
library("remotes")
install_github("cran/emba") Install by package version:
library("remotes")
install_version("emba", "0.1.8") Attach the package and use:
library("emba")
Maintained by
John Zobolas
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-10-21
Latest Update:
Description:
Analysis and visualization of an ensemble of boolean models for
biomarker discovery in cancer cell networks. The package allows to easily
load the simulation data results of the DrugLogics software pipeline which predicts synergistic drug
combinations in cancer cell lines (developed by the DrugLogics research group
in NTNU). It has generic functions that can be used to split a boolean model
dataset to model groups with regards to the models predictive performance (number of true
positive predictions/Matthews correlation coefficient score) or synergy prediction based on a given set
of gold standard synergies and find the average activity difference per network
node between all model group pairs. Thus, given user-specific thresholds,
important nodes (biomarkers) can be accessed in the sense that they make the
models predict specific synergies (synergy biomarkers) or have better
performance in general (performance biomarkers). Lastly, if the
boolean models have a specific equation form and differ only in their link operator,
link operator biomarkers can also be found.
How to cite:
John Zobolas (2019). emba: Ensemble Boolean Model Biomarker Analysis. R package version 0.1.8, https://cran.r-project.org/web/packages/emba. Accessed 04 Jun. 2026.
Previous versions and publish date:
Other packages that cited emba R package
View emba citation profile
Other R packages that emba depends,
imports, suggests or enhances
Functions, R codes and Examples using
the emba R package
Some associated functions: add_numbers_above_the_bars . assign_link_operator_value_to_equation . biomarker_mcc_analysis . biomarker_synergy_analysis . biomarker_tp_analysis . calculate_mcc . calculate_models_mcc . calculate_models_synergies_fn . calculate_models_synergies_fp . calculate_models_synergies_tn . calculate_models_synergies_tp . construct_network . count_models_that_predict_synergies . emba . filter_network . get_alt_drugname . get_avg_activity_diff_based_on_mcc_clustering . get_avg_activity_diff_based_on_specific_synergy_prediction . get_avg_activity_diff_based_on_synergy_set_cmp . get_avg_activity_diff_based_on_tp_predictions . get_avg_activity_diff_mat_based_on_mcc_clustering . get_avg_activity_diff_mat_based_on_specific_synergy_prediction . get_avg_activity_diff_mat_based_on_tp_predictions . get_avg_link_operator_diff_based_on_synergy_set_cmp . get_avg_link_operator_diff_mat_based_on_mcc_clustering . get_avg_link_operator_diff_mat_based_on_specific_synergy_prediction . get_avg_link_operator_diff_mat_based_on_tp_predictions . get_biomarkers . get_biomarkers_per_type . get_edges_from_topology_file . get_fitness_from_models_dir . get_link_operators_from_models_dir . get_model_names . get_model_predictions . get_models_based_on_mcc_class_id . get_neighbors . get_node_colors . get_node_names . get_observed_model_predictions . get_observed_synergies . get_observed_synergies_per_cell_line . get_perf_biomarkers_per_cell_line . get_stable_state_from_models_dir . get_synergy_biomarkers_from_dir . get_synergy_biomarkers_per_cell_line . get_synergy_comparison_sets . get_synergy_scores . get_synergy_subset_stats . get_unobserved_model_predictions . get_vector_diff . get_x_axis_values . is_comb_element_of . make_barplot_on_models_stats . make_barplot_on_synergy_subset_stats . plot_avg_link_operator_diff_graph . plot_avg_link_operator_diff_graphs . plot_avg_state_diff_graph . plot_avg_state_diff_graph_vis . plot_avg_state_diff_graphs . plot_mcc_classes_hist . print_biomarkers_per_predicted_synergy . print_model_and_drug_stats . update_biomarker_files . validate_observed_synergies_data .
Some associated R codes: analysis.R . biomarkers.R . diff.R . emba.R . general.R . input.R . output.R . plot.R . Full emba package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
AMPLE
Three Shiny apps are provided that introduce Harvest Control Rules (HCR) for fisheries management.
...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Finlay Scott (view profile)
murphydiagram
Data and code for the paper by Ehm, Gneiting, Jordan and
Krueger ('Of Quantiles and Expectiles: Con ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Fabian Krueger (view profile)
golem
An opinionated framework for building a production-ready
'Shiny' application. This package contains ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Colin Fay (view profile)
crplyr
In order to facilitate analysis of datasets hosted on the Crunch
data platform ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Greg Freedman Ellis (view profile)
phers
Use phenotype risk scores based on linked clinical and genetic data
to study Mendelian disease and ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jake Hughey (view profile)
27,268
R Packages
233,548
Dependencies
72,590
Author Associations
27,205
Publication Badges
