Other packages > Find by keyword >

effectR  

Predicts Oomycete Effectors
View on CRAN: Click here


Download and install effectR package within the R console
Install from CRAN:
install.packages("effectR")

Install from Github:
library("remotes")
install_github("cran/effectR")

Install by package version:
library("remotes")
install_version("effectR", "1.0.2")



Attach the package and use:
library("effectR")
Maintained by
Javier Tabima
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-01-17
Latest Update:
Description:
Predicts cytoplasmic effector proteins using genomic data by searching for motifs of interest using regular expression searches and hidden Markov models (HMM) based in Haas et al. (2009) .
How to cite:
Javier Tabima (2018). effectR: Predicts Oomycete Effectors. R package version 1.0.2, https://cran.r-project.org/web/packages/effectR. Accessed 21 Sep. 2026.
Previous versions and publish date:
(2026-07-09 07:35), 1.0.0 (2018-01-17 12:26), 1.0.1 (2018-04-25 21:51), 1.0.2 (2018-09-30 23:30)
Other packages that cited effectR R package
View effectR citation profile
Other R packages that effectR depends, imports, suggests or enhances
Complete documentation for effectR
Functions, R codes and Examples using the effectR R package
Some associated functions: candidate.rxlr . effectR . effector.summary . fasta_to_stockholm . get_hmmer_path . get_mafft_path . hmm.logo . hmm.search . regex.search . shiny.effectR . 
Some associated R codes: datasets.R . effector.summary.R . hmm.logo.R . hmm.search.R . internal.R . package.R . regex.search.R . shiny.effectR.R .  Full effectR package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

iSFun  
Integrative Dimension Reduction Analysis for Multi-Source Data
The implement of integrative analysis methods based on a two-part penalization, which realizes dimen ...
Download / Learn more Package Citations See dependency  
outerbase  
Outer Product Regression
High-dimensional regression using outer product models. Research on the methods is currently under ...
Download / Learn more Package Citations See dependency  
figuRes2  
Support for a Variety of Figure Production Tasks
We view a figure as a collection of graphs/tables assembled on a page and optionally annotated with ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
processR  
Implementation of the "PROCESS" Macro
Perform moderation mediation moderated mediation and moderated moderation.Inspired from famous PROCE ...
Download / Learn more Package Citations See dependency  
tripack  
Triangulation of Irregularly Spaced Data
A constrained two-dimensional Delaunay triangulation package providing both triangulation and genera ...
Download / Learn more Package Citations See dependency  

28,720

R Packages

247,686

Dependencies

75,677

Author Associations

28,721

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA