Other packages > Find by keyword >

effectR  

Predicts Oomycete Effectors
View on CRAN: Click here


Download and install effectR package within the R console
Install from CRAN:
install.packages("effectR")

Install from Github:
library("remotes")
install_github("cran/effectR")

Install by package version:
library("remotes")
install_version("effectR", "1.0.2")



Attach the package and use:
library("effectR")
Maintained by
Javier Tabima
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-01-17
Latest Update:
Description:
Predicts cytoplasmic effector proteins using genomic data by searching for motifs of interest using regular expression searches and hidden Markov models (HMM) based in Haas et al. (2009) .
How to cite:
Javier Tabima (2018). effectR: Predicts Oomycete Effectors. R package version 1.0.2, https://cran.r-project.org/web/packages/effectR. Accessed 20 Jul. 2026.
Previous versions and publish date:
(2026-07-09 07:35), 1.0.0 (2018-01-17 12:26), 1.0.1 (2018-04-25 21:51), 1.0.2 (2018-09-30 23:30)
Other packages that cited effectR R package
View effectR citation profile
Other R packages that effectR depends, imports, suggests or enhances
Complete documentation for effectR
Functions, R codes and Examples using the effectR R package
Some associated functions: candidate.rxlr . effectR . effector.summary . fasta_to_stockholm . get_hmmer_path . get_mafft_path . hmm.logo . hmm.search . regex.search . shiny.effectR . 
Some associated R codes: datasets.R . effector.summary.R . hmm.logo.R . hmm.search.R . internal.R . package.R . regex.search.R . shiny.effectR.R .  Full effectR package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

secsse  
Several Examined and Concealed States-Dependent Speciation and Extinction
Simultaneously infers state-dependent diversification across two or more states of a single or mult ...
Download / Learn more Package Citations See dependency  
ecospat  
Spatial Ecology Miscellaneous Methods
Collection of R functions and data sets for the support of spatial ecology analyses with a focus on ...
Download / Learn more Package Citations See dependency  
metaLik  
Likelihood Inference in Meta-Analysis and Meta-Regression Models
First- and higher-order likelihood inference in meta-analysis and meta-regression models. ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
iemiscdata  
Irucka Embry's Miscellaneous Data Collection
Miscellaneous data sets [Chemistry, Engineering Economics, Environmental/Water Resources Engineerin ...
Download / Learn more Package Citations See dependency  

27,889

R Packages

239,283

Dependencies

74,019

Author Associations

27,890

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA