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edlibR  

R Integration for Edlib, the C/C++ Library for Exact Pairwise Sequence Alignment using Edit (Levenshtein) Distance
View on CRAN: Click here


Download and install edlibR package within the R console
Install from CRAN:
install.packages("edlibR")

Install from Github:
library("remotes")
install_github("cran/edlibR")

Install by package version:
library("remotes")
install_version("edlibR", "1.0.2")



Attach the package and use:
library("edlibR")
Maintained by
Evan Biederstedt
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-01-12
Latest Update: 2022-11-21
Description:
Bindings to edlib, a lightweight performant C/C++ library for exact pairwise sequence alignment using edit distance (Levenshtein distance). The algorithm computes the optimal alignment path, but also can be used to find only the start and/or end of the alignment path for convenience. Edlib was designed to be ultrafast and require little memory, with the capability to handle very large sequences. Three alignment methods are supported: global (Needleman-Wunsch), infix (Hybrid Wunsch), and prefix (Semi-Hybrid Wunsch). The original C/C++ library is described in "Edlib: a C/C++ library for fast, exact sequence alignment using edit distance", M.
How to cite:
Evan Biederstedt (2022). edlibR: R Integration for Edlib, the C/C++ Library for Exact Pairwise Sequence Alignment using Edit (Levenshtein) Distance. R package version 1.0.2, https://cran.r-project.org/web/packages/edlibR. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.0 (2022-01-12 11:52), 1.0.1 (2022-11-21 14:10)
Other packages that cited edlibR R package
View edlibR citation profile
Other R packages that edlibR depends, imports, suggests or enhances
Complete documentation for edlibR
Functions, R codes and Examples using the edlibR R package
Some associated functions: align . getNiceAlignment . nice_print . 
Some associated R codes: RcppExports.R . main.R .  Full edlibR package functions and examples
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