Other packages > Find by keyword >

edlibR  

R Integration for Edlib, the C/C++ Library for Exact Pairwise Sequence Alignment using Edit (Levenshtein) Distance
View on CRAN: Click here


Download and install edlibR package within the R console
Install from CRAN:
install.packages("edlibR")

Install from Github:
library("remotes")
install_github("cran/edlibR")

Install by package version:
library("remotes")
install_version("edlibR", "1.0.3")



Attach the package and use:
library("edlibR")
Maintained by
Evan Biederstedt
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-01-12
Latest Update: 2025-07-20
Description:
Bindings to edlib, a lightweight performant C/C++ library for exact pairwise sequence alignment using edit distance (Levenshtein distance). The algorithm computes the optimal alignment path, but also can be used to find only the start and/or end of the alignment path for convenience. Edlib was designed to be ultrafast and require little memory, with the capability to handle very large sequences. Three alignment methods are supported: global (Needleman-Wunsch), infix (Hybrid Wunsch), and prefix (Semi-Hybrid Wunsch). The original C/C++ library is described in "Edlib: a C/C++ library for fast, exact sequence alignment using edit distance", M.
How to cite:
Evan Biederstedt (2022). edlibR: R Integration for Edlib, the C/C++ Library for Exact Pairwise Sequence Alignment using Edit (Levenshtein) Distance. R package version 1.0.3, https://cran.r-project.org/web/packages/edlibR. Accessed 02 Nov. 2026.
Previous versions and publish date:
(2026-07-09 07:35), 1.0.0 (2022-01-12 11:52), 1.0.1 (2022-11-21 14:10), 1.0.2 (2024-02-23 01:10)
Other packages that cited edlibR R package
View edlibR citation profile
Other R packages that edlibR depends, imports, suggests or enhances
Complete documentation for edlibR
Functions, R codes and Examples using the edlibR R package
Some associated functions: align . getNiceAlignment . nice_print . 
Some associated R codes: RcppExports.R . main.R .  Full edlibR package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

VFP  
Variance Function Program
Variance function estimation for models proposed by W. Sadler in his variance function program ('VF ...
Download / Learn more Package Citations See dependency  
palaeoverse  
Prepare and Explore Data for Palaeobiological Analyses
Provides functionality to support data preparation and exploration for palaeobiological analyses, i ...
Download / Learn more Package Citations See dependency  
EDOtrans  
Euclidean Distance-Optimized Data Transformation
A data transformation method which takes into account the special property of scale non-invariance w ...
Download / Learn more Package Citations See dependency  
SemiEstimate  
Solve Semi-Parametric Estimation by Implicit Profiling
Semi-parametric estimation problem can be solved by two-step Newton-Raphson iteration. The implicit ...
Download / Learn more Package Citations See dependency  
aws.translate  
Client for 'AWS Translate'
A client for 'AWS Translate' , a machine translation ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

29,315

R Packages

247,686

Dependencies

77,531

Author Associations

29,316

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA