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ecocomDP  

Tools to Create, Use, and Convert ecocomDP Data
View on CRAN: Click here


Download and install ecocomDP package within the R console
Install from CRAN:
install.packages("ecocomDP")

Install from Github:
library("remotes")
install_github("cran/ecocomDP")

Install by package version:
library("remotes")
install_version("ecocomDP", "1.3.2")



Attach the package and use:
library("ecocomDP")
Maintained by
Colin Smith
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-06-10
Latest Update: 2024-08-16
Description:
Work with the Ecological Community Data Design Pattern. 'ecocomDP' is a flexible data model for harmonizing ecological community surveys, in a research question agnostic format, from source data published across repositories, and with methods that keep the derived data up-to-date as the underlying sources change. Described in O'Brien et al. (2021), .
How to cite:
Colin Smith (2021). ecocomDP: Tools to Create, Use, and Convert ecocomDP Data. R package version 1.3.2, https://cran.r-project.org/web/packages/ecocomDP. Accessed 05 Jun. 2026.
Previous versions and publish date:
1.0.0 (2021-06-10 14:00), 1.1.0 (2021-07-31 13:50), 1.2.0 (2021-10-19 00:50), 1.2.1 (2022-03-07 08:50), 1.2.2 (2023-06-20 01:00), 1.3.1 (2024-02-21 21:30)
Other packages that cited ecocomDP R package
View ecocomDP citation profile
Other R packages that ecocomDP depends, imports, suggests or enhances
Complete documentation for ecocomDP
Functions, R codes and Examples using the ecocomDP R package
Some associated functions: annotation_dictionary . ants_L0_flat . ants_L1 . calc_geo_extent_bounding_box_m2 . calc_length_of_survey_years . calc_number_of_years_sampled . calc_std_dev_interval_betw_years . convert_to_dwca . create_dataset_summary . create_eml . create_location . create_location_ancillary . create_observation . create_observation_ancillary . create_taxon . create_taxon_ancillary . create_variable_mapping . flatten_data . plot_sample_space_time . plot_sites . plot_taxa_abund . plot_taxa_accum_sites . plot_taxa_accum_time . plot_taxa_diversity . plot_taxa_occur_freq . plot_taxa_rank . plot_taxa_sample_time . plot_taxa_shared_sites . read_data . save_data . search_data . validate_data . write_tables . 
Some associated R codes: EAL_make_eml.R . EAL_template_arguments.R . EAL_validate.R . annotation_dictionary.R . convert_to_dwca.R . create_dataset_summary.R . create_eml.R . create_location.R . create_location_ancillary.R . create_observation.R . create_observation_ancillary.R . create_taxon.R . create_taxon_ancillary.R . create_variable_mapping.R . data.R . flatten_data.R . map_neon.ecocomdp.10003.001.001.R . map_neon.ecocomdp.10022.001.001.R . map_neon.ecocomdp.10022.001.002.R . map_neon.ecocomdp.10043.001.001.R . map_neon.ecocomdp.10058.001.001.R . map_neon.ecocomdp.10072.001.001.R . map_neon.ecocomdp.10092.001.001.R . map_neon.ecocomdp.10093.001.001.R . map_neon.ecocomdp.20107.001.001.R . map_neon.ecocomdp.20120.001.001.R . map_neon.ecocomdp.20166.001.001.R . map_neon.ecocomdp.20219.001.001.R . plot_taxa.R . read_data.R . save_data.R . search_data.R . taxonomyCleanr.R . utilities.R . validate_arguments.R . validate_data.R . zzz.R .  Full ecocomDP package functions and examples
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