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easybio  

Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit
View on CRAN: Click here


Download and install easybio package within the R console
Install from CRAN:
install.packages("easybio")

Install from Github:
library("remotes")
install_github("cran/easybio")

Install by package version:
library("remotes")
install_version("easybio", "1.1.0")



Attach the package and use:
library("easybio")
Maintained by
Wei Cui
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-09-05
Latest Update: 2024-09-20
Description:
Provides a comprehensive toolkit for single-cell annotation with the 'CellMarker2.0' database <http://bio-bigdata.hrbmu.edu.cn/CellMarker/>. Streamlines biological label assignment in single-cell RNA-seq data and facilitates transcriptomic analysis, including preparation of TCGA<https://portal.gdc.cancer.gov/> and GEO<https://www.ncbi.nlm.nih.gov/geo/> datasets, differential expression analysis and visualization of enrichment analysis results. Additional utility functions support various bioinformatics workflows.
How to cite:
Wei Cui (2024). easybio: Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit. R package version 1.1.0, https://cran.r-project.org/web/packages/easybio. Accessed 03 Jan. 2025.
Previous versions and publish date:
1.0.1 (2024-09-08 22:20), 1.0 (2024-09-05 18:50)
Other packages that cited easybio R package
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Complete documentation for easybio
Functions, R codes and Examples using the easybio R package
Full easybio package functions and examples
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