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earlyR
View on CRAN: Click
here
Download and install earlyR package within the R console
Install from CRAN:
install.packages("earlyR")
Install from Github:
library("remotes")
install_github("cran/earlyR")
Install by package version:
library("remotes")
install_version("earlyR", "0.0.5")
Attach the package and use:
library("earlyR")
Maintained by
Thibaut Jombart
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-12-06
Latest Update: 2020-10-27
Description:
Implements a simple, likelihood-based estimation of the reproduction number (R0) using a branching process with a Poisson likelihood. This model requires knowledge of the serial interval distribution, and dates of symptom onsets. Infectiousness is determined by weighting R0 by the probability mass function of the serial interval on the corresponding day. It is a simplified version of the model introduced by Cori et al. (2013) .
How to cite:
Thibaut Jombart (2017). earlyR: Estimation of Transmissibility in the Early Stages of a Disease Outbreak. R package version 0.0.5, https://cran.r-project.org/web/packages/earlyR
Previous versions and publish date:
0.0.1 (2017-12-06 16:50)
Other packages that cited earlyR R package
View earlyR citation profile
Other R packages that earlyR depends,
imports, suggests or enhances
Functions, R codes and Examples using
the earlyR R package
Some associated functions: get_R . plot.earlyR . print.earlyR . sample_R .
Some associated R codes: get_R.R . internals.R . plot.earlyR.R . print.earlyR.R . sample_R.R . Full earlyR package functions and examples
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