Other packages > Find by keyword >

eDNAjoint  

Joint Modeling of Traditional and Environmental DNA Survey Data in a Bayesian Framework
View on CRAN: Click here


Download and install eDNAjoint package within the R console
Install from CRAN:
install.packages("eDNAjoint")

Install from Github:
library("remotes")
install_github("cran/eDNAjoint")

Install by package version:
library("remotes")
install_version("eDNAjoint", "0.3.3")



Attach the package and use:
library("eDNAjoint")
Maintained by
Abigail G. Keller
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-10-08
Latest Update: 2025-06-21
Description:
Models integrate environmental DNA (eDNA) detection data and traditional survey data to jointly estimate species catch rate (see package vignette: <https://bookdown.org/abigailkeller/eDNAjoint_vignette/>). Models can be used with count data via traditional survey methods (i.e., trapping, electrofishing, visual) and replicated eDNA detection/nondetection data via polymerase chain reaction (i.e., PCR or qPCR) from multiple survey locations. Estimated parameters include probability of a false positive eDNA detection, a site-level covariates that scale the sensitivity of eDNA surveys relative to traditional surveys, and catchability coefficients for traditional gear types. Models are implemented with a Bayesian framework (Markov chain Monte Carlo) using the 'Stan' probabilistic programming language.
How to cite:
Abigail G. Keller (2024). eDNAjoint: Joint Modeling of Traditional and Environmental DNA Survey Data in a Bayesian Framework. R package version 0.3.3, https://cran.r-project.org/web/packages/eDNAjoint. Accessed 07 Mar. 2026.
Previous versions and publish date:
0.2 (2024-10-08 12:00), 0.3.1 (2025-01-25 18:40), 0.3.2 (2025-03-17 05:20), 0.3 (2025-01-17 23:50)
Other packages that cited eDNAjoint R package
View eDNAjoint citation profile
Other R packages that eDNAjoint depends, imports, suggests or enhances
Complete documentation for eDNAjoint
Functions, R codes and Examples using the eDNAjoint R package
Full eDNAjoint package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

prepdat  
Preparing Experimental Data for Statistical Analysis
Prepares data for statistical analysis (e.g., analysis of variance ;ANOVA) by enabling the user to ...
Download / Learn more Package Citations See dependency  
RobPer  
Robust Periodogram and Periodicity Detection Methods
Calculates periodograms based on (robustly) fitting periodic functions to light curves (irregularly ...
Download / Learn more Package Citations See dependency  
didrooRFM  
Compute Recency Frequency Monetary Scores for your Customer Data
This hosts the findRFM function which generates RFM scores on a 1-5 point scale for customer transa ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
factoextra  
Extract and Visualize the Results of Multivariate Data Analyses
Provides some easy-to-use functions to extract and visualize the output of multivariate data analys ...
Download / Learn more Package Citations See dependency  
momentfit  
Methods of Moments
Several classes for moment-based models are defined. The classes are defined for moment conditions d ...
Download / Learn more Package Citations See dependency  

26,270

R Packages

223,360

Dependencies

70,376

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA