Other packages > Find by keyword >

eDNAjoint  

Joint Modeling of Traditional and Environmental DNA Survey Data in a Bayesian Framework
View on CRAN: Click here


Download and install eDNAjoint package within the R console
Install from CRAN:
install.packages("eDNAjoint")

Install from Github:
library("remotes")
install_github("cran/eDNAjoint")

Install by package version:
library("remotes")
install_version("eDNAjoint", "0.3.3")



Attach the package and use:
library("eDNAjoint")
Maintained by
Abigail G. Keller
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-10-08
Latest Update: 2025-06-21
Description:
Models integrate environmental DNA (eDNA) detection data and traditional survey data to jointly estimate species catch rate (see package vignette: <https://bookdown.org/abigailkeller/eDNAjoint_vignette/>). Models can be used with count data via traditional survey methods (i.e., trapping, electrofishing, visual) and replicated eDNA detection/nondetection data via polymerase chain reaction (i.e., PCR or qPCR) from multiple survey locations. Estimated parameters include probability of a false positive eDNA detection, a site-level covariates that scale the sensitivity of eDNA surveys relative to traditional surveys, and catchability coefficients for traditional gear types. Models are implemented with a Bayesian framework (Markov chain Monte Carlo) using the 'Stan' probabilistic programming language.
How to cite:
Abigail G. Keller (2024). eDNAjoint: Joint Modeling of Traditional and Environmental DNA Survey Data in a Bayesian Framework. R package version 0.3.3, https://cran.r-project.org/web/packages/eDNAjoint. Accessed 24 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:34), 0.2 (2024-10-08 12:00), 0.3.1 (2025-01-25 18:40), 0.3.2 (2025-03-17 05:20), 0.3 (2025-01-17 23:50)
Other packages that cited eDNAjoint R package
View eDNAjoint citation profile
Other R packages that eDNAjoint depends, imports, suggests or enhances
Complete documentation for eDNAjoint
Functions, R codes and Examples using the eDNAjoint R package
Full eDNAjoint package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

visdat  
Preliminary Visualisation of Data
Create preliminary exploratory data visualisations of an entire dataset to identify problems or une ...
Download / Learn more Package Citations See dependency  
RcmdrPlugin.depthTools  
R Commander Depth Tools Plug-in
We provide an Rcmdr plug-in based on the depthTools package, which implements different robust stat ...
Download / Learn more Package Citations See dependency  
funprog  
Functional Programming
High-order functions for data manipulation : sort or group data, given one or more auxiliary func ...
Download / Learn more Package Citations See dependency  
r3PG  
Simulating Forest Growth using the 3-PG Model
Provides a flexible and easy-to-use interface for the Physiological Processes Predicting Growth (3-P ...
Download / Learn more Package Citations See dependency  
OOBCurve  
Out of Bag Learning Curve
Provides functions to calculate the out-of-bag learning curve for random forests for any measure tha ...
Download / Learn more Package Citations See dependency  
extlasso  
Maximum Penalized Likelihood Estimation with Extended Lasso Penalty
Estimates coefficients of extended LASSO penalized linear regression and generalized linear models. ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,081

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA