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eDITH
View on CRAN: Click
here
Download and install eDITH package within the R console
Install from CRAN:
install.packages("eDITH")
Install from Github:
library("remotes")
install_github("cran/eDITH")
Install by package version:
library("remotes")
install_version("eDITH", "0.3.0")
Attach the package and use:
library("eDITH")
Maintained by
Luca Carraro
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-09-14
Latest Update: 2024-01-16
Description:
Runs the eDITH (environmental DNA Integrating Transport
and Hydrology) model, which implements a mass balance of environmental DNA (eDNA)
transport at a river network scale coupled with a species distribution model
to obtain maps of species distribution. eDITH can work with both eDNA concentration
(e.g., obtained via quantitative polymerase chain reaction) or metabarcoding
(read count) data. Parameter estimation can be performed via Bayesian techniques
(via the 'BayesianTools' package) or optimization algorithms. An interface to the
'DHARMa' package for posterior predictive checks is provided. See Carraro and
Altermatt (2024) for a package introduction;
Carraro et al. (2018) and Carraro et al. (2020)
for methodological details.
How to cite:
Luca Carraro (2023). eDITH: Model Transport of Environmental DNA in River Networks. R package version 0.3.0, https://cran.r-project.org/web/packages/eDITH
Previous versions and publish date:
Other packages that cited eDITH R package
View eDITH citation profile
Other R packages that eDITH depends,
imports, suggests or enhances
Functions, R codes and Examples using
the eDITH R package
Some associated functions: dataC . dataRead . eDITH-package . eval_posterior_eDITH . outSample . posterior_pred_sim_eDITH . run_eDITH_BT . run_eDITH_optim . run_eDITH_single . wigger .
Some associated R codes: RcppExports.R . eval_posterior_eDITH.R . posterior_pred_sim_eDITH.R . run_eDITH_BT.R . run_eDITH_optim.R . run_eDITH_single.R . Full eDITH package functions and examples
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