Other packages > Find by keyword >

dynafluxr  

Retrieve Reaction Rate Dynamics from Metabolite Concentration Time Courses
View on CRAN: Click here


Download and install dynafluxr package within the R console
Install from CRAN:
install.packages("dynafluxr")

Install from Github:
library("remotes")
install_github("cran/dynafluxr")

Install by package version:
library("remotes")
install_version("dynafluxr", "1.0.1")



Attach the package and use:
library("dynafluxr")
Maintained by
Serguei Sokol
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-07-10
Latest Update: 2025-07-10
Description:
Reaction rate dynamics can be retrieved from metabolite concentration time courses. User has to provide corresponding stoichiometric matrix but not a regulation model (Michaelis-Menten or similar). Instead of solving an ordinary differential equation (ODE) system describing the evolution of concentrations, we use B-splines to catch the concentration and rate dynamics then solve a least square problem on their coefficients with non-negativity (and optionally monotonicity) constraints. Constraints can be also set on initial values of concentration. The package 'dynafluxr' can be used as a library but also as an application with command line interface dynafluxr::cli("-h") or graphical user interface dynafluxr::gui().
How to cite:
Serguei Sokol (2025). dynafluxr: Retrieve Reaction Rate Dynamics from Metabolite Concentration Time Courses. R package version 1.0.1, https://cran.r-project.org/web/packages/dynafluxr. Accessed 25 Oct. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited dynafluxr R package
View dynafluxr citation profile
Other R packages that dynafluxr depends, imports, suggests or enhances
Complete documentation for dynafluxr
Functions, R codes and Examples using the dynafluxr R package
Full dynafluxr package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

RcmdrPlugin.aRnova  
R Commander Plug-in for Repeated-Measures ANOVA
R Commander plug-in for repeated-measures and mixed-design ('split-plot') ANOVA. It adds a new men ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
CTT  
Classical Test Theory Functions
A collection of common test and item analyses from a classical test theory (CTT) framework. Analyses ...
Download / Learn more Package Citations See dependency  
fstcore  
R Bindings to the 'Fstlib' Library
The 'fstlib' library provides multithreaded serialization of compressed data frames using the 'fst' ...
Download / Learn more Package Citations See dependency  
guardianapi  
Access 'The Guardian' Newspaper Open Data API
Access to 'The Guardian' newspaper's open API , containing ...
Download / Learn more Package Citations See dependency  
nlstools  
Tools for Nonlinear Regression Analysis
Several tools for assessing the quality of fit of a gaussian nonlinear model are provided. ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA