Other packages > Find by keyword >

douconca  

Double Constrained Correspondence Analysis for Trait-Environment Analysis in Ecology
View on CRAN: Click here


Download and install douconca package within the R console
Install from CRAN:
install.packages("douconca")

Install from Github:
library("remotes")
install_github("cran/douconca")

Install by package version:
library("remotes")
install_version("douconca", "1.2.2")



Attach the package and use:
library("douconca")
Maintained by
Bart-Jan van Rossum
[Scholar Profile | Author Map]
First Published: 2024-09-13
Latest Update: 2024-09-13
Description:
Double constrained correspondence analysis (dc-CA) analyzes (multi-)trait (multi-)environment ecological data by using the 'vegan' package and native R code. Throughout the two step algorithm of ter Braak et al. (2018) is used. This algorithm combines and extends community- (sample-) and species-level analyses, i.e. the usual community weighted means (CWM)-based regression analysis and the species-level analysis of species-niche centroids (SNC)-based regression analysis. The two steps use canonical correspondence analysis to regress the abundance data on to the traits and (weighted) redundancy analysis to regress the CWM of the orthonormalized traits on to the environmental predictors. The function dc_CA() has an option to divide the abundance data of a site by the site total, giving equal site weights. This division has the advantage that the multivariate analysis corresponds with an unweighted (multi-trait) community-level analysis, instead of being weighted. The first step of the algorithm uses vegan::cca(). The second step uses wrda() but vegan::rda() if the site weights are equal. This version has a predict() function. For details see ter Braak et al. 2018 <doi:10.1007/s10651-017-0395-x>.
How to cite:
Bart-Jan van Rossum (2024). douconca: Double Constrained Correspondence Analysis for Trait-Environment Analysis in Ecology. R package version 1.2.2, https://cran.r-project.org/web/packages/douconca. Accessed 10 May. 2025.
Previous versions and publish date:
1.2.0 (2024-09-13 20:20), 1.2.1 (2024-09-25 14:40), 1.2.2 (2024-12-02 14:10)
Other packages that cited douconca R package
View douconca citation profile
Other R packages that douconca depends, imports, suggests or enhances
Complete documentation for douconca
Functions, R codes and Examples using the douconca R package
Full douconca package functions and examples
Downloads during the last 30 days
04/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/2804/2904/3005/0105/0205/0305/0405/0505/0605/0705/08Downloads for douconca012345678910111213TrendBars

Today's Hot Picks in Authors and Packages

specklestar  
Reduction of Speckle Data from BTA 6-m Telescope
A set of functions for obtaining positional parameters and magnitude difference between components o ...
Download / Learn more Package Citations See dependency  
hdpGLM  
Hierarchical Dirichlet Process Generalized Linear Models
Implementation of MCMC algorithms to estimate the Hierarchical Dirichlet Process Generalized Linear ...
Download / Learn more Package Citations See dependency  
dataprep  
Efficient and Flexible Data Preprocessing Tools
Efficiently and flexibly preprocess data using a set of data filtering, deletion, and interpolation ...
Download / Learn more Package Citations See dependency  
distreg.vis  
Framework for the Visualization of Distributional Regression Models
Functions for visualizing distributional regression models fitted using the 'gamlss', 'bamlss' or 'b ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

24,205

R Packages

207,311

Dependencies

65,402

Author Associations

24,206

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA