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douconca  

Double Constrained Correspondence Analysis for Trait-Environment Analysis in Ecology
View on CRAN: Click here


Download and install douconca package within the R console
Install from CRAN:
install.packages("douconca")

Install from Github:
library("remotes")
install_github("cran/douconca")

Install by package version:
library("remotes")
install_version("douconca", "1.2.2")



Attach the package and use:
library("douconca")
Maintained by
Bart-Jan van Rossum
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-09-13
Latest Update: 2024-09-13
Description:
Double constrained correspondence analysis (dc-CA) analyzes (multi-)trait (multi-)environment ecological data by using the 'vegan' package and native R code. Throughout the two step algorithm of ter Braak et al. (2018) is used. This algorithm combines and extends community- (sample-) and species-level analyses, i.e. the usual community weighted means (CWM)-based regression analysis and the species-level analysis of species-niche centroids (SNC)-based regression analysis. The two steps use canonical correspondence analysis to regress the abundance data on to the traits and (weighted) redundancy analysis to regress the CWM of the orthonormalized traits on to the environmental predictors. The function dc_CA() has an option to divide the abundance data of a site by the site total, giving equal site weights. This division has the advantage that the multivariate analysis corresponds with an unweighted (multi-trait) community-level analysis, instead of being weighted. The first step of the algorithm uses vegan::cca(). The second step uses wrda() but vegan::rda() if the site weights are equal. This version has a predict() function. For details see ter Braak et al. 2018 <doi:10.1007/s10651-017-0395-x>.
How to cite:
Bart-Jan van Rossum (2024). douconca: Double Constrained Correspondence Analysis for Trait-Environment Analysis in Ecology. R package version 1.2.2, https://cran.r-project.org/web/packages/douconca. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.2.0 (2024-09-13 20:20), 1.2.1 (2024-09-25 14:40)
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