Other packages > Find by keyword >

dnet  

Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
View on CRAN: Click here


Download and install dnet package within the R console
Install from CRAN:
install.packages("dnet")

Install from Github:
library("remotes")
install_github("cran/dnet")

Install by package version:
library("remotes")
install_version("dnet", "1.1.7")



Attach the package and use:
library("dnet")
Maintained by
Hai Fang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-03-25
Latest Update: 2024-01-30
Description:
The focus of the dnet by Fang and Gough (2014) is to make sense of omics data (such as gene expression and mutations) from different angles including: integration with molecular networks, enrichments using ontologies, and relevance to gene evolutionary ages. Integration is achieved to identify a gene subnetwork from the whole gene network whose nodes/genes are labelled with informative data (such as the significant levels of differential expression or survival risks). To help make sense of identified gene networks, enrichment analysis is also supported using a wide variety of pre-compiled ontologies and phylostratific gene age information in major organisms including: human, mouse, rat, chicken, C.elegans, fruit fly, zebrafish and arabidopsis. Add-on functionalities are supports for calculating semantic similarity between ontology terms (and between genes) and for calculating network affinity based on random walk; both can be done via high-performance parallel computing.
How to cite:
Hai Fang (2014). dnet: Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology. R package version 1.1.7, https://cran.r-project.org/web/packages/dnet. Accessed 28 Mar. 2025.
Previous versions and publish date:
0.99.0 (2014-03-25 21:51), 1.0.0 (2014-04-09 16:46), 1.0.1 (2014-04-22 23:06), 1.0.2 (2014-04-30 20:42), 1.0.3 (2014-05-19 16:35), 1.0.4 (2014-06-05 21:54), 1.0.5 (2014-07-02 13:47), 1.0.6 (2014-09-22 17:31), 1.0.7 (2015-07-18 00:08), 1.0.8 (2016-04-01 16:24), 1.0.9 (2016-05-31 17:43), 1.0.10 (2017-01-27 10:18), 1.1.1 (2017-07-09 22:02), 1.1.2 (2018-01-19 15:48), 1.1.3 (2018-02-23 17:49), 1.1.4 (2018-08-10 19:00), 1.1.5 (2019-10-19 00:20), 1.1.6 (2020-01-23 14:40), 1.1.7 (2020-02-20 11:10)
Other packages that cited dnet R package
View dnet citation profile
Other R packages that dnet depends, imports, suggests or enhances
Downloads during the last 30 days
02/2602/2703/0203/0303/0503/0703/0803/1003/1103/1203/1303/1503/1603/1803/2003/2103/2203/2303/2403/27Downloads for dnet0510152025303540TrendBars

Today's Hot Picks in Authors and Packages

spinifex  
Manual Tours, Manual Control of Dynamic Projections of Numeric Multivariate Data
Data visualization tours animates linear projection of multivariate data as its basis (ie. orientat ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
gripp  
General Inverse Problem Platform
Set of functions designed to solve inverse problems. The direct problem is used to calculate a cost ...
Download / Learn more Package Citations See dependency  
FuzzyResampling  
Resampling Methods for Triangular and Trapezoidal Fuzzy Numbers
The classical (i.e. Efron's, see Efron and Tibshirani (1994, ISBN:978-0412042317) "An Introduction ...
Download / Learn more Package Citations See dependency  
transfR  
Transfer of Hydrograph from Gauged to Ungauged Catchments
A geomorphology-based hydrological modelling for transferring streamflow measurements from gauged to ...
Download / Learn more Package Citations See dependency  
hts  
Hierarchical and Grouped Time Series
Provides methods for analysing and forecasting hierarchical and grouped time series. The available ...
Download / Learn more Package Citations See dependency  

23,842

R Packages

207,311

Dependencies

64,420

Author Associations

23,781

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA