Other packages > Find by keyword >

dnet  

Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
View on CRAN: Click here


Download and install dnet package within the R console
Install from CRAN:
install.packages("dnet")

Install from Github:
library("remotes")
install_github("cran/dnet")

Install by package version:
library("remotes")
install_version("dnet", "1.1.7")



Attach the package and use:
library("dnet")
Maintained by
Hai Fang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-03-25
Latest Update:
Description:
The focus of the dnet by Fang and Gough (2014) is to make sense of omics data (such as gene expression and mutations) from different angles including: integration with molecular networks, enrichments using ontologies, and relevance to gene evolutionary ages. Integration is achieved to identify a gene subnetwork from the whole gene network whose nodes/genes are labelled with informative data (such as the significant levels of differential expression or survival risks). To help make sense of identified gene networks, enrichment analysis is also supported using a wide variety of pre-compiled ontologies and phylostratific gene age information in major organisms including: human, mouse, rat, chicken, C.elegans, fruit fly, zebrafish and arabidopsis. Add-on functionalities are supports for calculating semantic similarity between ontology terms (and between genes) and for calculating network affinity based on random walk; both can be done via high-performance parallel computing.
How to cite:
Hai Fang (2014). dnet: Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology. R package version 1.1.7, https://cran.r-project.org/web/packages/dnet. Accessed 05 Aug. 2026.
Previous versions and publish date:
(2026-07-09 07:32), 0.99.0 (2014-03-25 21:51), 1.0.0 (2014-04-09 16:46), 1.0.1 (2014-04-22 23:06), 1.0.2 (2014-04-30 20:42), 1.0.3 (2014-05-19 16:35), 1.0.4 (2014-06-05 21:54), 1.0.5 (2014-07-02 13:47), 1.0.6 (2014-09-22 17:31), 1.0.7 (2015-07-18 00:08), 1.0.8 (2016-04-01 16:24), 1.0.9 (2016-05-31 17:43), 1.0.10 (2017-01-27 10:18), 1.1.1 (2017-07-09 22:02), 1.1.2 (2018-01-19 15:48), 1.1.3 (2018-02-23 17:49), 1.1.4 (2018-08-10 19:00), 1.1.5 (2019-10-19 00:20), 1.1.6 (2020-01-23 14:40), 1.1.7 (2020-02-20 11:10)
Other packages that cited dnet R package
View dnet citation profile
Other R packages that dnet depends, imports, suggests or enhances
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
dhReg  
Dynamic Harmonic Regression
Building and forecasting time series data with multiple seasonality using Dynamic Harmonic Regressio ...
Download / Learn more Package Citations See dependency  
kernelPSI  
Post-Selection Inference for Nonlinear Variable Selection
Different post-selection inference strategies for kernelselection as described in kernelPSI a Post-S ...
Download / Learn more Package Citations See dependency  
dcov  
A Fast Implementation of Distance Covariance
Efficient methods for computing distance covariance and relevant statistics. See Sz ...
Download / Learn more Package Citations See dependency  
noisyr  
Noise Quantification in High Throughput Sequencing Output
Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are use ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA