R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
dnet
View on CRAN: Click
here
Download and install dnet package within the R console
Install from CRAN:
install.packages("dnet")
Install from Github:
library("remotes")
install_github("cran/dnet")
Install by package version:
library("remotes")
install_version("dnet", "1.1.7")
Attach the package and use:
library("dnet")
Maintained by
Hai Fang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-03-25
Latest Update: 2024-01-30
Description:
The focus of the dnet by Fang and Gough (2014) is to make sense of omics data (such as gene expression and mutations) from different angles including: integration with molecular networks, enrichments using ontologies, and relevance to gene evolutionary ages. Integration is achieved to identify a gene subnetwork from the whole gene network whose nodes/genes are labelled with informative data (such as the significant levels of differential expression or survival risks). To help make sense of identified gene networks, enrichment analysis is also supported using a wide variety of pre-compiled ontologies and phylostratific gene age information in major organisms including: human, mouse, rat, chicken, C.elegans, fruit fly, zebrafish and arabidopsis. Add-on functionalities are supports for calculating semantic similarity between ontology terms (and between genes) and for calculating network affinity based on random walk; both can be done via high-performance parallel computing.
How to cite:
Hai Fang (2014). dnet: Integrative Analysis of Omics Data in Terms of Network,
Evolution and Ontology. R package version 1.1.7, https://cran.r-project.org/web/packages/dnet. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.99.0 (2014-03-25 21:51), 1.0.0 (2014-04-09 16:46), 1.0.1 (2014-04-22 23:06), 1.0.2 (2014-04-30 20:42), 1.0.3 (2014-05-19 16:35), 1.0.4 (2014-06-05 21:54), 1.0.5 (2014-07-02 13:47), 1.0.6 (2014-09-22 17:31), 1.0.7 (2015-07-18 00:08), 1.0.8 (2016-04-01 16:24), 1.0.9 (2016-05-31 17:43), 1.0.10 (2017-01-27 10:18), 1.1.1 (2017-07-09 22:02), 1.1.2 (2018-01-19 15:48), 1.1.3 (2018-02-23 17:49), 1.1.4 (2018-08-10 19:00), 1.1.5 (2019-10-19 00:20), 1.1.6 (2020-01-23 14:40), 1.1.7 (2020-02-20 11:10)
Other packages that cited dnet R package
View dnet citation profile
Other R packages that dnet depends,
imports, suggests or enhances
Functions, R codes and Examples using
the dnet R package
Some associated functions: dBUMfit . dBUMscore . dCheckParallel . dCommSignif . dContrast . dDAGancestor . dDAGannotate . dDAGgeneSim . dDAGinduce . dDAGlevel . dDAGreverse . dDAGroot . dDAGtermSim . dDAGtip . dEnricher . dEnricherView . dFDRscore . dFunArgs . dGSEA . dGSEAview . dGSEAwrite . dNetConfidence . dNetFind . dNetInduce . dNetPipeline . dNetReorder . dPvalAggregate . dRDataLoader . dRWR . dRWRcontact . dRWRpipeline . dSVDsignif . ig.HPPA . org.Hs.egHPPA . visBoxplotAdv . visDAG . visGSEA . visNet . visNetAnimate . visNetArc . visNetCircle . visNetMul . visNetReorder .
Some associated R codes: Full dnet package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
pkgdepends
Find recursive dependencies of 'R' packages from various
sources. Solve the dependencies to obtain ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Gábor Csárdi (view profile)
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
RcppHNSW
'Hnswlib' is a C++ library for Approximate Nearest Neighbors.
This package provides a minimal R int ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: James Melville (view profile)
SCBiclust
Identifies a bicluster, a submatrix of the data such that the features and observations within the s ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Erika S. Helgeson (view profile)
kgschart
Restore underlining numeric data from rating history graph of
KGS (an online platform of the game o ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Kota Mori (view profile)
crossrun
Joint distribution of number of crossings and the
longest run in a series of independent Bernoulli ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Tore Wentzel-Larsen (view profile)