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diskImageR
View on CRAN: Click
here
Download and install diskImageR package within the R console
Install from CRAN:
install.packages("diskImageR")
Install from Github:
library("remotes")
install_github("cran/diskImageR")
Install by package version:
library("remotes")
install_version("diskImageR", "1.0.0")
Attach the package and use:
library("diskImageR")
Maintained by
Aleeza Gerstein
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-04-03
Latest Update: 2023-08-18
Description:
A pipeline to analyze photographs of disk diffusion plates. This removes the need to analyze the plates themselves, and thus analysis can be done separate from the assay. Furthermore, diskImageR removes potential researcher bias, by quantitative assessment of drug resistance as the zone diameter at multiple cutoff values of growth inhibition. This method also extends the disk diffusion assay by measuring drug tolerance (in addition to drug resistance) as the fraction of the subpopulation that is able to grow above the resistance point ("FoG"), and drug sensitivity as the rate of change from no growth to full growth ("slope").
How to cite:
Aleeza Gerstein (2016). diskImageR: A Pipeline to Analyze Resistance and Tolerance from Drug Disk
Diffusion Assays. R package version 1.0.0, https://cran.r-project.org/web/packages/diskImageR. Accessed 21 Nov. 2024.
Previous versions and publish date:
1.0.0 (2016-04-03 16:29)
Other packages that cited diskImageR R package
View diskImageR citation profile
Other R packages that diskImageR depends,
imports, suggests or enhances
Functions, R codes and Examples using
the diskImageR R package
Some associated functions: IJMacro . addType . aggregateData . calcMIC . createDataframe . maxLik . oneParamPlot . plotRaw . readExistingDF . readInExistingIJ . saveMLParam . threeParamPlot . twoParamPlot .
Some associated R codes: IJMacro.R . addType.R . aggregateData.R . calcMIC.R . createDataframe.R . maxLik.R . mle.R . oneParamPlot.R . plotRaw.R . readExistingDF.R . readExistingIJ.R . saveMLParam.R . threeParamPlot.R . twoParamPlot.R . Full diskImageR package functions and examples
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