Other packages > Find by keyword >

digitalDLSorteR  

Deconvolution of Bulk RNA-Seq Data Based on Deep Learning
View on CRAN: Click here


Download and install digitalDLSorteR package within the R console
Install from CRAN:
install.packages("digitalDLSorteR")

Install from Github:
library("remotes")
install_github("cran/digitalDLSorteR")

Install by package version:
library("remotes")
install_version("digitalDLSorteR", "1.1.0")



Attach the package and use:
library("digitalDLSorteR")
Maintained by
Diego Mañanes
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-10-08
Latest Update: 2022-10-05
Description:
Deconvolution of bulk RNA-Seq data using context-specific deconvolution models based on Deep Neural Networks using scRNA-Seq data as input. These models are able to make accurate estimates of the cell composition of bulk RNA-Seq samples from the same context using the advances provided by Deep Learning and the meaningful information provided by scRNA-Seq data. See Torroja and Sanchez-Cabo (2019) for more details.
How to cite:
Diego Mañanes (2021). digitalDLSorteR: Deconvolution of Bulk RNA-Seq Data Based on Deep Learning. R package version 1.1.0, https://cran.r-project.org/web/packages/digitalDLSorteR. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.1.0 (2021-10-08 11:50), 0.1.1 (2021-10-20 01:00), 0.2.0 (2022-03-10 11:10), 0.3.0 (2022-05-24 10:30), 0.3.1 (2022-10-05 10:40), 1.0.1 (2024-02-07 11:30), 1.1.0 (2024-09-13 17:20)
Other packages that cited digitalDLSorteR R package
View digitalDLSorteR citation profile
Other R packages that digitalDLSorteR depends, imports, suggests or enhances
Complete documentation for digitalDLSorteR
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
elect  
Estimation of Life Expectancies Using Multi-State Models
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency  
LOGANTree  
Tree-Based Models for the Analysis of Log Files from Computer-Based Assessments
Enables researchers to model log-file data from computer-based assessments using machine-learning te ...
Download / Learn more Package Citations See dependency  
Maintainer: Qi Qin (view profile)
wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  
dmlalg  
Double Machine Learning Algorithms
Implementation of double machine learning (DML) algorithms in R, based on Emmenegger and Buehlmann ...
Download / Learn more Package Citations See dependency  
tropAlgebra  
Tropical Algebraic Functions
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA