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diffwrap  

Differential Expression Analysis of RNA-Seq Data
View on CRAN: Click here


Download and install diffwrap package within the R console
Install from CRAN:
install.packages("diffwrap")

Install from Github:
library("remotes")
install_github("cran/diffwrap")

Install by package version:
library("remotes")
install_version("diffwrap", "0.6-3")



Attach the package and use:
library("diffwrap")
Maintained by
Vidal Fey
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-08-30
Latest Update: 2026-08-30
Description:
Functions for differential expression analysis of read counts from messenger RNA (mRNA) sequencing (RNA-Seq) data or micro RNA (miRNA) expression values generated by the Comprehensive Analysis Pipeline for microRNA Sequencing (CAP-miRSeq) 'expression_reports.sh' script. The workflow follows the 'edgeR'-'limma' expression data analysis pipeline providing options for different approaches, such as "pure" 'edgeR', voom or paired samples. The functions in the package generate text files with differential expression lists, optionally annotated with information from 'biomart', expression summary plots as well as several quality control (QC) plots. The main function, diffExpr(), is a convenience wrapper performing all steps automatically based on sensible defaults. Methods are described in Robinson, McCarthy and Smyth (2010) <doi:10.1093/bioinformatics/btp616>, Ritchie et al. (2015) <doi:10.1093/nar/gkv007>, Law et al. (2014) <doi:10.1186/gb-2014-15-2-r29> and Sun et al. (2014) <doi:10.1186/1471-2164-15-423>.
How to cite:
Vidal Fey (2026). diffwrap: Differential Expression Analysis of RNA-Seq Data. R package version 0.6-3, https://cran.r-project.org/web/packages/diffwrap. Accessed 12 Oct. 2026.
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