Other packages > Find by keyword >

diffwrap  

Differential Expression Analysis of RNA-Seq Data
View on CRAN: Click here


Download and install diffwrap package within the R console
Install from CRAN:
install.packages("diffwrap")

Install from Github:
library("remotes")
install_github("cran/diffwrap")

Install by package version:
library("remotes")
install_version("diffwrap", "0.6-3")



Attach the package and use:
library("diffwrap")
Maintained by
Vidal Fey
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-08-30
Latest Update: 2026-08-30
Description:
Functions for differential expression analysis of read counts from messenger RNA (mRNA) sequencing (RNA-Seq) data or micro RNA (miRNA) expression values generated by the Comprehensive Analysis Pipeline for microRNA Sequencing (CAP-miRSeq) 'expression_reports.sh' script. The workflow follows the 'edgeR'-'limma' expression data analysis pipeline providing options for different approaches, such as "pure" 'edgeR', voom or paired samples. The functions in the package generate text files with differential expression lists, optionally annotated with information from 'biomart', expression summary plots as well as several quality control (QC) plots. The main function, diffExpr(), is a convenience wrapper performing all steps automatically based on sensible defaults. Methods are described in Robinson, McCarthy and Smyth (2010) <doi:10.1093/bioinformatics/btp616>, Ritchie et al. (2015) <doi:10.1093/nar/gkv007>, Law et al. (2014) <doi:10.1186/gb-2014-15-2-r29> and Sun et al. (2014) <doi:10.1186/1471-2164-15-423>.
How to cite:
Vidal Fey (2026). diffwrap: Differential Expression Analysis of RNA-Seq Data. R package version 0.6-3, https://cran.r-project.org/web/packages/diffwrap. Accessed 02 Nov. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited diffwrap R package
View diffwrap citation profile
Other R packages that diffwrap depends, imports, suggests or enhances
Complete documentation for diffwrap
Functions, R codes and Examples using the diffwrap R package
Full diffwrap package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

aws.translate  
Client for 'AWS Translate'
A client for 'AWS Translate' , a machine translation ...
Download / Learn more Package Citations See dependency  
VFP  
Variance Function Program
Variance function estimation for models proposed by W. Sadler in his variance function program ('VF ...
Download / Learn more Package Citations See dependency  
EDOtrans  
Euclidean Distance-Optimized Data Transformation
A data transformation method which takes into account the special property of scale non-invariance w ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
palaeoverse  
Prepare and Explore Data for Palaeobiological Analyses
Provides functionality to support data preparation and exploration for palaeobiological analyses, i ...
Download / Learn more Package Citations See dependency  
SemiEstimate  
Solve Semi-Parametric Estimation by Implicit Profiling
Semi-parametric estimation problem can be solved by two-step Newton-Raphson iteration. The implicit ...
Download / Learn more Package Citations See dependency  

29,315

R Packages

247,686

Dependencies

77,531

Author Associations

29,316

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA