Other packages > Find by keyword >

diffwrap  

Differential Expression Analysis of RNA-Seq Data
View on CRAN: Click here


Download and install diffwrap package within the R console
Install from CRAN:
install.packages("diffwrap")

Install from Github:
library("remotes")
install_github("cran/diffwrap")

Install by package version:
library("remotes")
install_version("diffwrap", "0.6-3")



Attach the package and use:
library("diffwrap")
Maintained by
Vidal Fey
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-08-30
Latest Update: 2026-08-30
Description:
Functions for differential expression analysis of read counts from messenger RNA (mRNA) sequencing (RNA-Seq) data or micro RNA (miRNA) expression values generated by the Comprehensive Analysis Pipeline for microRNA Sequencing (CAP-miRSeq) 'expression_reports.sh' script. The workflow follows the 'edgeR'-'limma' expression data analysis pipeline providing options for different approaches, such as "pure" 'edgeR', voom or paired samples. The functions in the package generate text files with differential expression lists, optionally annotated with information from 'biomart', expression summary plots as well as several quality control (QC) plots. The main function, diffExpr(), is a convenience wrapper performing all steps automatically based on sensible defaults. Methods are described in Robinson, McCarthy and Smyth (2010) <doi:10.1093/bioinformatics/btp616>, Ritchie et al. (2015) <doi:10.1093/nar/gkv007>, Law et al. (2014) <doi:10.1186/gb-2014-15-2-r29> and Sun et al. (2014) <doi:10.1186/1471-2164-15-423>.
How to cite:
Vidal Fey (2026). diffwrap: Differential Expression Analysis of RNA-Seq Data. R package version 0.6-3, https://cran.r-project.org/web/packages/diffwrap. Accessed 21 Sep. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited diffwrap R package
View diffwrap citation profile
Other R packages that diffwrap depends, imports, suggests or enhances
Complete documentation for diffwrap
Functions, R codes and Examples using the diffwrap R package
Full diffwrap package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

iSFun  
Integrative Dimension Reduction Analysis for Multi-Source Data
The implement of integrative analysis methods based on a two-part penalization, which realizes dimen ...
Download / Learn more Package Citations See dependency  
outerbase  
Outer Product Regression
High-dimensional regression using outer product models. Research on the methods is currently under ...
Download / Learn more Package Citations See dependency  
tripack  
Triangulation of Irregularly Spaced Data
A constrained two-dimensional Delaunay triangulation package providing both triangulation and genera ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
processR  
Implementation of the "PROCESS" Macro
Perform moderation mediation moderated mediation and moderated moderation.Inspired from famous PROCE ...
Download / Learn more Package Citations See dependency  
figuRes2  
Support for a Variety of Figure Production Tasks
We view a figure as a collection of graphs/tables assembled on a page and optionally annotated with ...
Download / Learn more Package Citations See dependency  

28,720

R Packages

247,686

Dependencies

75,677

Author Associations

28,721

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA