Other packages > Find by keyword >

diffEnrich  

Given a List of Gene Symbols, Performs Differential Enrichment Analysis
View on CRAN: Click here


Download and install diffEnrich package within the R console
Install from CRAN:
install.packages("diffEnrich")

Install from Github:
library("remotes")
install_github("cran/diffEnrich")

Install by package version:
library("remotes")
install_version("diffEnrich", "0.1.2")



Attach the package and use:
library("diffEnrich")
Maintained by
Harry Smith
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-11-01
Latest Update: 2022-06-27
Description:
Compare functional enrichment between two experimentally-derived groups of genes or proteins (Peterson, DR., et al.(2018)) . Given a list of gene symbols, 'diffEnrich' will perform differential enrichment analysis using the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. This package provides a number of functions that are intended to be used in a pipeline. Briefly, the user provides a KEGG formatted species id for either human, mouse or rat, and the package will download and clean species specific ENTREZ gene IDs and map them to their respective KEGG pathways by accessing KEGG's REST API. KEGG's API is used to guarantee the most up-to-date pathway data from KEGG. Next, the user will identify significantly enriched pathways from two gene sets, and finally, the user will identify pathways that are differentially enriched between the two gene sets. In addition to the analysis pipeline, this package also provides a plotting function.
How to cite:
Harry Smith (2019). diffEnrich: Given a List of Gene Symbols, Performs Differential Enrichment Analysis. R package version 0.1.2, https://cran.r-project.org/web/packages/diffEnrich. Accessed 25 Jun. 2026.
Previous versions and publish date:
0.1.0 (2019-11-01 23:20), 0.1.1 (2019-11-21 23:40)
Other packages that cited diffEnrich R package
View diffEnrich citation profile
Other R packages that diffEnrich depends, imports, suggests or enhances
Complete documentation for diffEnrich
Functions, R codes and Examples using the diffEnrich R package
Some associated functions: diffEnrich . dot-api_pull . dot-combineEnrich . dot-data_read . geneLists . get_kegg . kegg . pathEnrich . plotFoldEnrichment . 
Some associated R codes: diffEnrich.R . get_kegg.R . pathEnrich.R . plotFoldEnrichment.R . sample_data.R .  Full diffEnrich package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  
sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  
edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA