Other packages > Find by keyword >

diffEnrich  

Given a List of Gene Symbols, Performs Differential Enrichment Analysis
View on CRAN: Click here


Download and install diffEnrich package within the R console
Install from CRAN:
install.packages("diffEnrich")

Install from Github:
library("remotes")
install_github("cran/diffEnrich")

Install by package version:
library("remotes")
install_version("diffEnrich", "0.1.2")



Attach the package and use:
library("diffEnrich")
Maintained by
Harry Smith
[Scholar Profile | Author Map]
First Published: 2019-11-01
Latest Update: 2022-06-27
Description:
Compare functional enrichment between two experimentally-derived groups of genes or proteins (Peterson, DR., et al.(2018)) . Given a list of gene symbols, 'diffEnrich' will perform differential enrichment analysis using the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. This package provides a number of functions that are intended to be used in a pipeline. Briefly, the user provides a KEGG formatted species id for either human, mouse or rat, and the package will download and clean species specific ENTREZ gene IDs and map them to their respective KEGG pathways by accessing KEGG's REST API. KEGG's API is used to guarantee the most up-to-date pathway data from KEGG. Next, the user will identify significantly enriched pathways from two gene sets, and finally, the user will identify pathways that are differentially enriched between the two gene sets. In addition to the analysis pipeline, this package also provides a plotting function.
How to cite:
Harry Smith (2019). diffEnrich: Given a List of Gene Symbols, Performs Differential Enrichment Analysis. R package version 0.1.2, https://cran.r-project.org/web/packages/diffEnrich. Accessed 29 Mar. 2025.
Previous versions and publish date:
0.1.0 (2019-11-01 23:20), 0.1.1 (2019-11-21 23:40)
Other packages that cited diffEnrich R package
View diffEnrich citation profile
Other R packages that diffEnrich depends, imports, suggests or enhances
Complete documentation for diffEnrich
Functions, R codes and Examples using the diffEnrich R package
Some associated functions: diffEnrich . dot-api_pull . dot-combineEnrich . dot-data_read . geneLists . get_kegg . kegg . pathEnrich . plotFoldEnrichment . 
Some associated R codes: diffEnrich.R . get_kegg.R . pathEnrich.R . plotFoldEnrichment.R . sample_data.R .  Full diffEnrich package functions and examples
Downloads during the last 30 days
02/2602/2702/2803/0103/0203/0303/0403/0503/0603/0703/0803/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/27Downloads for diffEnrich0246810121416TrendBars

Today's Hot Picks in Authors and Packages

gglgbtq  
Show Pride on 'ggplot2' Plots
Provides multiple palettes based on pride flags with tailored themes. ...
Download / Learn more Package Citations See dependency  
landmix  
Landmark Prediction for Mixture Data
Non-parametric prediction of survival outcomes for mixture data that incorporates covariates and a l ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

23,842

R Packages

207,311

Dependencies

64,420

Author Associations

23,781

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA