Other packages > Find by keyword >

denoiSeq  

Differential Expression Analysis Using a Bottom-Up Model
View on CRAN: Click here


Download and install denoiSeq package within the R console
Install from CRAN:
install.packages("denoiSeq")

Install from Github:
library("remotes")
install_github("cran/denoiSeq")

Install by package version:
library("remotes")
install_version("denoiSeq", "0.1.1")



Attach the package and use:
library("denoiSeq")
Maintained by
Gershom Buri
[Scholar Profile | Author Map]
First Published: 2017-07-18
Latest Update: 2018-01-31
Description:
Given count data from two conditions, it determines which transcripts are differentially expressed across the two conditions using Bayesian inference of the parameters of a bottom-up model for PCR amplification. This model is developed in Ndifon Wilfred, Hilah Gal, Eric Shifrut, Rina Aharoni, Nissan Yissachar, Nir Waysbort, Shlomit Reich Zeliger, Ruth Arnon, and Nir Friedman (2012), , and results in a distribution for the counts that is a superposition of the binomial and negative binomial distribution.
How to cite:
Gershom Buri (2017). denoiSeq: Differential Expression Analysis Using a Bottom-Up Model. R package version 0.1.1, https://cran.r-project.org/web/packages/denoiSeq. Accessed 12 May. 2025.
Previous versions and publish date:
0.1.0 (2017-07-18 21:15)
Other packages that cited denoiSeq R package
View denoiSeq citation profile
Other R packages that denoiSeq depends, imports, suggests or enhances
Complete documentation for denoiSeq
Functions, R codes and Examples using the denoiSeq R package
Some associated functions: ERCC . denoiseq . getSamplesOf . readsData . results . setInitValues . setOutput . setReplicates . setStepSizes . simdat . tunedStepSize . 
Some associated R codes: Class_denoiSeq.R . DE_analysis.R . Gibbs_samplers.R . Metrapolis_Hast_samplers.R . ercc.R . full_conditionals.R . n_step_sampler.R . output_functions.R . simulated.R .  Full denoiSeq package functions and examples
Downloads during the last 30 days
04/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/2804/2904/3005/0205/0305/0405/0505/0605/0705/0805/0905/10Downloads for denoiSeq024681012141618202224TrendBars

Today's Hot Picks in Authors and Packages

epinet  
Epidemic/Network-Related Tools
A collection of epidemic/network-related tools. Simulates transmission of diseases through contact n ...
Download / Learn more Package Citations See dependency  
sGMRFmix  
Sparse Gaussian Markov Random Field Mixtures for Anomaly Detection
An implementation of sparse Gaussian Markov random field mixtures presented by Ide et al. (2016) ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
LatticeKrig  
Multi-Resolution Kriging Based on Markov Random Fields
Methods for the interpolation of large spatial datasets. This package follows a "fixed rank Kriging ...
Download / Learn more Package Citations See dependency  
errorist  
Automatically Search Errors or Warnings
Provides environment hooks that obtain errors and warnings which occur during the execution of code ...
Download / Learn more Package Citations See dependency  
pander  
An R 'Pandoc' Writer
Contains some functions catching all messages, 'stdout' and other useful information while evaluati ...
Download / Learn more Package Citations See dependency  

24,223

R Packages

207,311

Dependencies

65,402

Author Associations

24,224

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA