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dendsort
View on CRAN: Click
here
Download and install dendsort package within the R console
Install from CRAN:
install.packages("dendsort")
Install from Github:
library("remotes")
install_github("cran/dendsort")
Install by package version:
library("remotes")
install_version("dendsort", "0.3.4")
Attach the package and use:
library("dendsort")
Maintained by
Evan Biederstedt
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-03-01
Latest Update: 2021-04-20
Description:
An implementation of functions to optimize ordering of nodes in a dendrogram, without affecting the meaning of the dendrogram. A dendrogram can be sorted based on the average distance of subtrees, or based on the smallest distance value. These sorting methods improve readability and interpretability of tree structure, especially for tasks such as comparison of different distance measures or linkage types and identification of tight clusters and outliers. As a result, it also introduces more meaningful reordering for a coupled heatmap visualization. This method is described in "dendsort: modular leaf ordering methods for dendrogram representations in R", F1000Research 2014, 3: 177 .
How to cite:
Evan Biederstedt (2014). dendsort: Modular Leaf Ordering Methods for Dendrogram Nodes. R package version 0.3.4, https://cran.r-project.org/web/packages/dendsort
Previous versions and publish date:
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imports, suggests or enhances
Functions, R codes and Examples using
the dendsort R package
Some associated functions: cal_length . cal_node_limit . cal_total_length . dendsort-package . dendsort . sample_tcga . sort_average . sort_average_r . sort_smallest . sort_smallest_r .
Some associated R codes: cal_length.R . cal_node_limit.R . cal_total_length.R . dendsort-package.R . dendsort.R . sort_average.R . sort_average_r.R . sort_smallest.R . sort_smallest_r.R . Full dendsort package functions and examples
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