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demic
View on CRAN: Click
here
Download and install demic package within the R console
Install from CRAN:
install.packages("demic")
Install from Github:
library("remotes")
install_github("cran/demic")
Install by package version:
library("remotes")
install_version("demic", "2.0.0")
Attach the package and use:
library("demic")
Maintained by
Charlie Bushman
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-01-11
Latest Update: 2024-01-22
Description:
Multi-sample algorithm based on contigs and coverage values, to
infer the relative distances of contigs from the replication origin and to
accurately compare bacterial growth rates between samples. Yuan Gao and
Hongzhe Li (2018) .
How to cite:
Charlie Bushman (2024). demic: Dynamic Estimator of Microbial Communities. R package version 2.0.0, https://cran.r-project.org/web/packages/demic. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.3 (2024-01-11 10:50)
Other packages that cited demic R package
View demic citation profile
Other R packages that demic depends,
imports, suggests or enhances
Complete documentation for demic
Functions, R codes and Examples using
the demic R package
Some associated functions: ContigCluster1 . ContigCluster2 . compare_contig_subsets . compare_sample_subsets . consist_transfer . contig_pca . cor_diff . df_transfer . est_ptr . est_ptr_on . est_ptr_on_all . est_ptrs_subset . filter_sample . get_eptr_stats . iterate_pipelines . ks . lm_column . lme4_model . max_bin_001 . max_bin_002 . max_bin_003 . pipeline . reshape_filtered . select_by_ks_test . test_reasonable . verify_input .
Some associated R codes: data.R . est_PTR.R . est_ptr_stats.R . pipeline_core.R . pipeline_utils.R . pipelines.R . utils.R . Full demic package functions and examples
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