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deepredeff  

Deep Learning Prediction of Effectors
View on CRAN: Click here


Download and install deepredeff package within the R console
Install from CRAN:
install.packages("deepredeff")

Install from Github:
library("remotes")
install_github("cran/deepredeff")

Install by package version:
library("remotes")
install_version("deepredeff", "0.1.1")



Attach the package and use:
library("deepredeff")
Maintained by
Ruth Kristianingsih
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-10-23
Latest Update: 2021-07-16
Description:
A tool that contains trained deep learning models for predicting effector proteins. 'deepredeff' has been trained to identify effector proteins using a set of known experimentally validated effectors from either bacteria, fungi, or oomycetes. Documentation is available via several vignettes, and the paper by Kristianingsih and MacLean (2020) .
How to cite:
Ruth Kristianingsih (2020). deepredeff: Deep Learning Prediction of Effectors. R package version 0.1.1, https://cran.r-project.org/web/packages/deepredeff. Accessed 05 Mar. 2026.
Previous versions and publish date:
0.1.0 (2020-10-23 12:30), 0.1.1 (2021-07-16 11:30)
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Complete documentation for deepredeff
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