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dcifer  

Genetic Relatedness Between Polyclonal Infections
View on CRAN: Click here


Download and install dcifer package within the R console
Install from CRAN:
install.packages("dcifer")

Install from Github:
library("remotes")
install_github("cran/dcifer")

Install by package version:
library("remotes")
install_version("dcifer", "1.5.0")



Attach the package and use:
library("dcifer")
Maintained by
Inna Gerlovina
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-07-15
Latest Update: 2023-12-12
Description:
An implementation of Dcifer (Distance for complex infections: fast estimation of relatedness), an identity by descent (IBD) based method to calculate genetic relatedness between polyclonal infections from biallelic and multiallelic data. The package includes functions that format and preprocess the data, implement the method, and visualize the results. Gerlovina et al. (2022) .
How to cite:
Inna Gerlovina (2022). dcifer: Genetic Relatedness Between Polyclonal Infections. R package version 1.5.0, https://cran.r-project.org/web/packages/dcifer. Accessed 16 Jul. 2026.
Previous versions and publish date:
(2026-07-09 07:31), 1.0.1 (2022-07-15 18:00), 1.1.0 (2022-08-06 09:30), 1.1.1 (2022-08-10 17:50), 1.2.0 (2022-10-31 08:40), 1.2.1 (2023-12-12 10:30), 1.5.0 (2025-11-11 06:30)
Other packages that cited dcifer R package
View dcifer citation profile
Other R packages that dcifer depends, imports, suggests or enhances
Complete documentation for dcifer
Functions, R codes and Examples using the dcifer R package
Some associated functions: calcAfreq . dres . dsmp . format . generateReval . getCOI . ibdDat . ibdEstM . ibdPair . logReval . matchAfreq . plotColorbar . plotRel . probUxUy . revals . 
Some associated R codes: data.R . ibd.R . plot.R . prep.R . probUxUy.R .  Full dcifer package functions and examples
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