Other packages > Find by keyword >

dcGOR  

Analysis of Ontologies and Protein Domain Annotations
View on CRAN: Click here


Download and install dcGOR package within the R console
Install from CRAN:
install.packages("dcGOR")

Install from Github:
library("remotes")
install_github("cran/dcGOR")

Install by package version:
library("remotes")
install_version("dcGOR", "1.0.6")



Attach the package and use:
library("dcGOR")
Maintained by
Hai Fang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-07-02
Latest Update:
Description:
There lacks a package for analysing domain-centric ontologies and annotations, particularly those in the dcGO database. The dcGO (http://supfam.org/SUPERFAMILY/dcGO) is a comprehensive domain-centric database for annotating protein domains using a panel of ontologies including Gene Ontology. With the package, users are expected to analyse and visualise domain-centric ontologies and annotations. Supported analyses include but are not limited to: easy access to a wide range of ontologies and their domain-centric annotations; able to build customised ontologies and annotations; domain-based enrichment analysis and visualisation; construction of a domain (semantic similarity) network according to ontology annotations; significance analysis for estimating a contact (statistical significance) network via Random Walk with Restart; and high-performance parallel computing. The new functionalities are: 1) to create domain-centric ontologies; 2) to predict ontology terms for input protein sequences (precisely domain content in the form of architectures) plus to assess the predictions; 3) to reconstruct ancestral discrete characters using maximum likelihood/parsimony.
How to cite:
Hai Fang (2014). dcGOR: Analysis of Ontologies and Protein Domain Annotations. R package version 1.0.6, https://cran.r-project.org/web/packages/dcGOR. Accessed 18 Sep. 2026.
Previous versions and publish date:
(2026-07-09 07:30), 1.0.0 (2014-07-02 17:08), 1.0.2 (2014-07-25 18:42), 1.0.3 (2014-09-25 13:41), 1.0.4 (2014-12-04 00:23), 1.0.5 (2015-07-20 19:19), 1.0.6 (2015-07-27 10:52)
Other packages that cited dcGOR R package
View dcGOR citation profile
Other R packages that dcGOR depends, imports, suggests or enhances
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
hmeasure  
The H-Measure and Other Scalar Classification Performance Metrics
Classification performance metrics that are derived from the ROC curve of a classifier. The package ...
Download / Learn more Package Citations See dependency  
eyelinker  
Import ASC Files from EyeLink Eye Trackers
Imports plain-text ASC data files from EyeLink eye trackers into (relatively) tidy data frames for ...
Download / Learn more Package Citations See dependency  
downlit  
Syntax Highlighting and Automatic Linking
Syntax highlighting of R code, specifically designed for the needs of 'RMarkdown' packages like 'pk ...
Download / Learn more Package Citations See dependency  
injectoR  
R Dependency Injection
R dependency injection framework. Dependency injection allows a program design to follow the depend ...
Download / Learn more Package Citations See dependency  
data360r  
Wrapper for 'TCdata360' and 'Govdata360' API
Makes it easy to engage with the Application Program Interface (API) of the 'TCdata360' and 'Govdat ...
Download / Learn more Package Citations See dependency  

28,565

R Packages

239,283

Dependencies

75,677

Author Associations

28,566

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA