Other packages > Find by keyword >

dcGOR  

Analysis of Ontologies and Protein Domain Annotations
View on CRAN: Click here


Download and install dcGOR package within the R console
Install from CRAN:
install.packages("dcGOR")

Install from Github:
library("remotes")
install_github("cran/dcGOR")

Install by package version:
library("remotes")
install_version("dcGOR", "1.0.6")



Attach the package and use:
library("dcGOR")
Maintained by
Hai Fang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-07-02
Latest Update:
Description:
There lacks a package for analysing domain-centric ontologies and annotations, particularly those in the dcGO database. The dcGO (http://supfam.org/SUPERFAMILY/dcGO) is a comprehensive domain-centric database for annotating protein domains using a panel of ontologies including Gene Ontology. With the package, users are expected to analyse and visualise domain-centric ontologies and annotations. Supported analyses include but are not limited to: easy access to a wide range of ontologies and their domain-centric annotations; able to build customised ontologies and annotations; domain-based enrichment analysis and visualisation; construction of a domain (semantic similarity) network according to ontology annotations; significance analysis for estimating a contact (statistical significance) network via Random Walk with Restart; and high-performance parallel computing. The new functionalities are: 1) to create domain-centric ontologies; 2) to predict ontology terms for input protein sequences (precisely domain content in the form of architectures) plus to assess the predictions; 3) to reconstruct ancestral discrete characters using maximum likelihood/parsimony.
How to cite:
Hai Fang (2014). dcGOR: Analysis of Ontologies and Protein Domain Annotations. R package version 1.0.6, https://cran.r-project.org/web/packages/dcGOR. Accessed 12 Mar. 2026.
Previous versions and publish date:
1.0.0 (2014-07-02 17:08), 1.0.2 (2014-07-25 18:42), 1.0.3 (2014-09-25 13:41), 1.0.4 (2014-12-04 00:23), 1.0.5 (2015-07-20 19:19), 1.0.6 (2015-07-27 10:52)
Other packages that cited dcGOR R package
View dcGOR citation profile
Other R packages that dcGOR depends, imports, suggests or enhances
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

threewords  
Represent Precise Coordinates in Three Words
A connector to the 'What3Words' (http://what3words.co ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
funnelR  
Funnel Plots for Proportion Data
A set of simplified functions for creating funnel plots for proportion data. This package supports u ...
Download / Learn more Package Citations See dependency  
impactflu  
Quantification of Population-Level Impact of Vaccination
Implements the compartment model from Tokars (2018) . This ena ...
Download / Learn more Package Citations See dependency  
sloop  
Helpers for 'OOP' in R
A collection of helper functions designed to help you to better understand object oriented programmi ...
Download / Learn more Package Citations See dependency  
riskCommunicator  
G-Computation to Estimate Interpretable Epidemiological Effects
Estimates flexible epidemiological effect measures including both differences and ratios using the p ...
Download / Learn more Package Citations See dependency  

26,293

R Packages

225,784

Dependencies

70,376

Author Associations

26,294

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA