Other packages > Find by keyword >

dcGOR  

Analysis of Ontologies and Protein Domain Annotations
View on CRAN: Click here


Download and install dcGOR package within the R console
Install from CRAN:
install.packages("dcGOR")

Install from Github:
library("remotes")
install_github("cran/dcGOR")

Install by package version:
library("remotes")
install_version("dcGOR", "1.0.6")



Attach the package and use:
library("dcGOR")
Maintained by
Hai Fang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-07-02
Latest Update:
Description:
There lacks a package for analysing domain-centric ontologies and annotations, particularly those in the dcGO database. The dcGO (http://supfam.org/SUPERFAMILY/dcGO) is a comprehensive domain-centric database for annotating protein domains using a panel of ontologies including Gene Ontology. With the package, users are expected to analyse and visualise domain-centric ontologies and annotations. Supported analyses include but are not limited to: easy access to a wide range of ontologies and their domain-centric annotations; able to build customised ontologies and annotations; domain-based enrichment analysis and visualisation; construction of a domain (semantic similarity) network according to ontology annotations; significance analysis for estimating a contact (statistical significance) network via Random Walk with Restart; and high-performance parallel computing. The new functionalities are: 1) to create domain-centric ontologies; 2) to predict ontology terms for input protein sequences (precisely domain content in the form of architectures) plus to assess the predictions; 3) to reconstruct ancestral discrete characters using maximum likelihood/parsimony.
How to cite:
Hai Fang (2014). dcGOR: Analysis of Ontologies and Protein Domain Annotations. R package version 1.0.6, https://cran.r-project.org/web/packages/dcGOR. Accessed 11 Mar. 2026.
Previous versions and publish date:
1.0.0 (2014-07-02 17:08), 1.0.2 (2014-07-25 18:42), 1.0.3 (2014-09-25 13:41), 1.0.4 (2014-12-04 00:23), 1.0.5 (2015-07-20 19:19), 1.0.6 (2015-07-27 10:52)
Other packages that cited dcGOR R package
View dcGOR citation profile
Other R packages that dcGOR depends, imports, suggests or enhances
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

openNLPdata  
Apache OpenNLP Jars and Basic English Language Models
Apache OpenNLP jars and basic English language models. ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
histogram  
Construction of Regular and Irregular Histograms with Different Options for Automatic Choice of Bins
Automatic construction of regular and irregular histograms as described in Rozenholc/Mildenberger/Ga ...
Download / Learn more Package Citations See dependency  
sorocs  
A Bayesian Semiparametric Approach to Correlated ROC Surfaces
A Bayesian semiparametric Dirichlet process mixtures to estimate correlated receiver operating chara ...
Download / Learn more Package Citations See dependency  
igoR  
Intergovernmental Organizations Database
Tools to extract information from the Intergovernmental Organizations ('IGO') Database , version 3, ...
Download / Learn more Package Citations See dependency  
roptions  
Option Strategies and Valuation
Collection of tools to develop options strategies, value option contracts using the Black-Scholes-Me ...
Download / Learn more Package Citations See dependency  

26,293

R Packages

225,784

Dependencies

70,376

Author Associations

26,294

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA