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dMod
View on CRAN: Click
here
Download and install dMod package within the R console
Install from CRAN:
install.packages("dMod")
Install from Github:
library("remotes")
install_github("cran/dMod") Install by package version:
library("remotes")
install_version("dMod", "1.0.2") Attach the package and use:
library("dMod")
Maintained by
Daniel Kaschek
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-06-11
Latest Update: 2021-01-27
Description:
The framework provides functions to generate ODEs of reaction
networks, parameter transformations, observation functions, residual functions,
etc. The framework follows the paradigm that derivative information should be
used for optimization whenever possible. Therefore, all major functions produce
and can handle expressions for symbolic derivatives. The methods used in dMod
were published in Kaschek et al, 2019, .
How to cite:
Daniel Kaschek (2015). dMod: Dynamic Modeling and Parameter Estimation in ODE Models. R package version 1.0.2, https://cran.r-project.org/web/packages/dMod. Accessed 30 Aug. 2026.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for dMod
Functions, R codes and Examples using
the dMod R package
Some associated functions: Id . P . Pexpl . Pimpl . Xd . Xf . Xs . Xt . Y . addReaction . as.data.frame.dMod . as.data.frame.eqnlist . as.eqnvec . as.eventlist . asjlist . as.parframe . as.parvec.parframe . attrs . blockdiagSymb . combine . compare . compile . confint.parframe . conservedQuantities . constraintExp2 . constraintL2 . controls . coordTransform . covariates . datalist . datapointL2 . define . dot . eqnlist . eqnvec . eventlist . expand.grid.alt . fitErrorModel . forcingsSymb . format.eqnvec . funC0 . getCoefficients . getConditions . getDerivs . getEquations . getFluxes . getLocalDLLs . getObservables . getParameters . getReactions . ggopen . grapes-.-times-grapes . jakstat . lbind . load.parlist . loadDLL . long2wide . lsdMod . match.fnargs . mname . modelname . msParframe . mstrust . nll . normL2 . nullZ . objframe . objlist . obsfn . odemodel . parfn . parframe . parlist . parvec . plot.datalist . plot.parlist . plotCombined . plotData . plotFluxes . plotPars . plotPaths . plotPrediction . plotProfile . plotResiduals . plotValues . plus-.datalist . plus-.fn . plus-jfn . plus-jlist . prdfn . prdframe . prdlist . predict.prdfn . print.eqnlist . print.eqnvec . print.parfn . print.parvec . print0 . priorL2 . profile . progressBar . reduceReplicates . repar . res . resolveRecurrence . rref . scale_color_dMod . scale_fill_dMod . stat.parlist . steadyStates . strelide . strpad . submatrix . subset.eqnlist . summary.eqnvec . symmetryDetection . theme_dMod . times-.fn . trust . unique.parframe . wide2long.data.frame . wide2long.list . wide2long.matrix . wide2long . write.eqnlist . wrss .
Some associated R codes: classes.R . dMod.R . data.R . dataClass.R . eqnClass.R . eventClass.R . objClass.R . odeClass.R . parClass.R . parameters.R . plots.R . prdClass.R . prediction.R . statistics.R . steadyStates.R . strings.R . symbolics.R . symmetryDetection.R . tools.R . trust.R . trustL1.R . Full dMod package functions and examples
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