Other packages > Find by keyword >

cytominer  

Methods for Image-Based Cell Profiling
View on CRAN: Click here


Download and install cytominer package within the R console
Install from CRAN:
install.packages("cytominer")

Install from Github:
library("remotes")
install_github("cran/cytominer")

Install by package version:
library("remotes")
install_version("cytominer", "0.2.2")



Attach the package and use:
library("cytominer")
Maintained by
Shantanu Singh
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-09-17
Latest Update: 2020-05-09
Description:
Typical morphological profiling datasets have millions of cells and hundreds of features per cell. When working with this data, you must clean the data, normalize the features to make them comparable across experiments, transform the features, select features based on their quality, and aggregate the single-cell data, if needed. 'cytominer' makes these steps fast and easy. Methods used in practice in the field are discussed in Caicedo (2017) . An overview of the field is presented in Caicedo (2016) .
How to cite:
Shantanu Singh (2017). cytominer: Methods for Image-Based Cell Profiling. R package version 0.2.2, https://cran.r-project.org/web/packages/cytominer. Accessed 07 Mar. 2026.
Previous versions and publish date:
0.1.0 (2017-09-17 20:25), 0.2.1 (2020-03-23 11:40)
Other packages that cited cytominer R package
View cytominer citation profile
Other R packages that cytominer depends, imports, suggests or enhances
Complete documentation for cytominer
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

ReviewR  
A Light-Weight, Portable Tool for Reviewing Individual Patient Records
A portable Shiny tool to explore patient-level electronic health record data and perform chart revi ...
Download / Learn more Package Citations See dependency  
lmSubsets  
Exact Variable-Subset Selection in Linear Regression
Exact and approximation algorithms for variable-subset selection in ordinary linear regression mode ...
Download / Learn more Package Citations See dependency  
testDriveR  
Teaching Data for Statistics and Data Science
Provides data sets for teaching statistics and data science courses. It includes a sample of data f ...
Download / Learn more Package Citations See dependency  
portalr  
Create Useful Summaries of the Portal Data
Download and generate summaries for the rodent, plant, ant, and weather data from the Portal Projec ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
SAMtool  
Stock Assessment Methods Toolkit
Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,376

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA