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cytominer  

Methods for Image-Based Cell Profiling
View on CRAN: Click here


Download and install cytominer package within the R console
Install from CRAN:
install.packages("cytominer")

Install from Github:
library("remotes")
install_github("cran/cytominer")

Install by package version:
library("remotes")
install_version("cytominer", "0.2.2")



Attach the package and use:
library("cytominer")
Maintained by
Shantanu Singh
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-09-17
Latest Update: 2020-05-09
Description:
Typical morphological profiling datasets have millions of cells and hundreds of features per cell. When working with this data, you must clean the data, normalize the features to make them comparable across experiments, transform the features, select features based on their quality, and aggregate the single-cell data, if needed. 'cytominer' makes these steps fast and easy. Methods used in practice in the field are discussed in Caicedo (2017) . An overview of the field is presented in Caicedo (2016) .
How to cite:
Shantanu Singh (2017). cytominer: Methods for Image-Based Cell Profiling. R package version 0.2.2, https://cran.r-project.org/web/packages/cytominer. Accessed 22 Sep. 2026.
Previous versions and publish date:
(2026-07-09 07:30), 0.1.0 (2017-09-17 20:25), 0.2.1 (2020-03-23 11:40)
Other packages that cited cytominer R package
View cytominer citation profile
Other R packages that cytominer depends, imports, suggests or enhances
Complete documentation for cytominer
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