Other packages > Find by keyword >

cytominer  

Methods for Image-Based Cell Profiling
View on CRAN: Click here


Download and install cytominer package within the R console
Install from CRAN:
install.packages("cytominer")

Install from Github:
library("remotes")
install_github("cran/cytominer")

Install by package version:
library("remotes")
install_version("cytominer", "0.2.2")



Attach the package and use:
library("cytominer")
Maintained by
Shantanu Singh
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-09-17
Latest Update: 2020-05-09
Description:
Typical morphological profiling datasets have millions of cells and hundreds of features per cell. When working with this data, you must clean the data, normalize the features to make them comparable across experiments, transform the features, select features based on their quality, and aggregate the single-cell data, if needed. 'cytominer' makes these steps fast and easy. Methods used in practice in the field are discussed in Caicedo (2017) . An overview of the field is presented in Caicedo (2016) .
How to cite:
Shantanu Singh (2017). cytominer: Methods for Image-Based Cell Profiling. R package version 0.2.2, https://cran.r-project.org/web/packages/cytominer. Accessed 02 Feb. 2025.
Previous versions and publish date:
0.1.0 (2017-09-17 20:25), 0.2.1 (2020-03-23 11:40)
Other packages that cited cytominer R package
View cytominer citation profile
Other R packages that cytominer depends, imports, suggests or enhances
Complete documentation for cytominer
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

bndovb  
Bounding Omitted Variable Bias Using Auxiliary Data
Functions to implement a Hwang(2021) estimator, which bounds an omitted v ...
Download / Learn more Package Citations See dependency  
listcompr  
List Comprehension for R
Syntactic shortcuts for creating synthetic lists, vectors, data frames, and matrices using list com ...
Download / Learn more Package Citations See dependency  
cptcity  
'cpt-city' Colour Gradients
Incorporates colour gradients from the 'cpt-city' web archive available at ...
Download / Learn more Package Citations See dependency  
cleandata  
To Inspect and Manipulate Data; and to Keep Track of This Process
Functions to work with data frames to prepare data for further analysis. The functions for imputati ...
Download / Learn more Package Citations See dependency  
CPNCoverageAnalysis  
Conceptual Properties Norming Studies as Parameter Estimation
Implementation of conceptual properties norming studies, including estimates of CPNs parameters with ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

23,580

R Packages

204,057

Dependencies

63,980

Author Associations

23,581

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA