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cytometree
View on CRAN: Click
here
Download and install cytometree package within the R console
Install from CRAN:
install.packages("cytometree")
Install from Github:
library("remotes")
install_github("cran/cytometree")
Install by package version:
library("remotes")
install_version("cytometree", "2.0.2")
Attach the package and use:
library("cytometree")
Maintained by
Boris P Hejblum
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-06-26
Latest Update: 2019-12-04
Description:
Given the hypothesis of a bi-modal distribution of cells for
each marker, the algorithm constructs a binary tree, the nodes of which are
subpopulations of cells. At each node, observed cells and markers are modeled
by both a family of normal distributions and a family of bi-modal normal mixture
distributions. Splitting is done according to a normalized difference of AIC
between the two families. Method is detailed in: Commenges, Alkhassim, Gottardo,
Hejblum & Thiebaut (2018) .
How to cite:
Boris P Hejblum (2017). cytometree: Automated Cytometry Gating and Annotation. R package version 2.0.2, https://cran.r-project.org/web/packages/cytometree
Previous versions and publish date:
Other packages that cited cytometree R package
View cytometree citation profile
Other R packages that cytometree depends,
imports, suggests or enhances
Functions, R codes and Examples using
the cytometree R package
Some associated functions: Annotation . AsinhTransformation . BiexpTransformation . BinaryTree . CytEM . CytofEM . CytofTree . Cytof_BinaryTree . CytomeTree . DLBCL . FmeasureC . FmeasureC_no0 . GaussMix . GaussMix2 . HIPC . IMdata . KmeansOPT . LeavesCenters . LeavesMedians . Log10Transformation . Partition2gr . Partition3gr . RetrievePops . TreeAnnot . bootstrapCI . cytometree-package . plot_cytopop . plot_graph . plot_nodes .
Some associated R codes: Annotation.R . AsinhTransformation.R . BiexpTransformation.R . BinaryTree.R . CytEM.R . CytofEM.R . CytofTree.R . Cytof_BinaryTree.R . CytomeTree.R . IMdata.R . KmeansOPT.R . LeavesCenters.R . LeavesMedians.R . Log10Transformation.R . RcppExports.R . bootstrapCI.R . cytometree-package.R . plot_cytopop.R . plot_nodes.R . Full cytometree package functions and examples
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