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cuperdec  

Cumulative Percent Decay Curve Generator
View on CRAN: Click here


Download and install cuperdec package within the R console
Install from CRAN:
install.packages("cuperdec")

Install from Github:
library("remotes")
install_github("cran/cuperdec")

Install by package version:
library("remotes")
install_version("cuperdec", "1.1.0")



Attach the package and use:
library("cuperdec")
Maintained by
James A. Fellows Yates
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-04-07
Latest Update: 2021-09-12
Description:
Calculates and visualises cumulative percent 'decay' curves, which are typically calculated from metagenomic taxonomic profiles. These can be used to estimate the level of expected 'endogenous' taxa at different abundance levels retrieved from metagenomic samples, when comparing to samples of known sampling site or source. Method described in Fellows Yates, J. A. et. al. (2021) Proceedings of the National Academy of Sciences USA .
How to cite:
James A. Fellows Yates (2021). cuperdec: Cumulative Percent Decay Curve Generator. R package version 1.1.0, https://cran.r-project.org/web/packages/cuperdec. Accessed 11 Mar. 2026.
Previous versions and publish date:
1.0.0 (2021-04-07 10:40)
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Complete documentation for cuperdec
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