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cuperdec
View on CRAN: Click
here
Download and install cuperdec package within the R console
Install from CRAN:
install.packages("cuperdec")
Install from Github:
library("remotes")
install_github("cran/cuperdec")
Install by package version:
library("remotes")
install_version("cuperdec", "1.1.0")
Attach the package and use:
library("cuperdec")
Maintained by
James A. Fellows Yates
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-04-07
Latest Update: 2021-09-12
Description:
Calculates and visualises cumulative percent 'decay' curves,
which are typically calculated from metagenomic taxonomic profiles.
These can be used to estimate the level of expected 'endogenous' taxa
at different abundance levels retrieved from metagenomic samples, when
comparing to samples of known sampling site or source. Method
described in Fellows Yates, J. A. et. al. (2021) Proceedings of the
National Academy of Sciences USA .
How to cite:
James A. Fellows Yates (2021). cuperdec: Cumulative Percent Decay Curve Generator. R package version 1.1.0, https://cran.r-project.org/web/packages/cuperdec. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.0 (2021-04-07 10:40)
Other packages that cited cuperdec R package
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Other R packages that cuperdec depends,
imports, suggests or enhances
Complete documentation for cuperdec
Functions, R codes and Examples using
the cuperdec R package
Some associated functions: adaptive_burnin_filter . calculate_curve . cuperdec_database_ex . cuperdec_metadata_ex . cuperdec_taxatable_ex . hard_burnin_filter . load_database . load_map . load_taxa_table . plot_cuperdec . simple_filter .
Some associated R codes: calculations.R . cuperdec-data.R . loading.R . plotting.R . validators.R . zzz.R . Full cuperdec package functions and examples
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