R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
csmpv
View on CRAN: Click
here
Download and install csmpv package within the R console
Install from CRAN:
install.packages("csmpv")
Install from Github:
library("remotes")
install_github("cran/csmpv")
Install by package version:
library("remotes")
install_version("csmpv", "1.0.3")
Attach the package and use:
library("csmpv")
Maintained by
Aixiang Jiang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-01-10
Latest Update: 2024-03-01
Description:
There are diverse purposes such as biomarker confirmation, novel biomarker discovery, constructing predictive models, model-based prediction, and validation.
It handles binary, continuous, and time-to-event outcomes at the sample or patient level.
- Biomarker confirmation utilizes established functions like glm() from 'stats', coxph() from 'survival', surv_fit(), and ggsurvplot() from 'survminer'.
- Biomarker discovery and variable selection are facilitated by three LASSO-related functions LASSO2(), LASSO_plus(), and LASSO2plus(), leveraging the 'glmnet' R package with additional steps.
- Eight versatile modeling functions are offered, each designed for predictive models across various outcomes and data types.
1) LASSO2(), LASSO_plus(), LASSO2plus(), and LASSO2_reg() perform variable selection using LASSO methods and construct predictive models based on selected variables.
2) XGBtraining() employs 'XGBoost' for model building and is the only function not involving variable selection.
3) Functions like LASSO2_XGBtraining(), LASSOplus_XGBtraining(), and LASSO2plus_XGBtraining() combine LASSO-related variable selection with 'XGBoost' for model construction.
- All models support prediction and validation, requiring a testing dataset comparable to the training dataset.
Additionally, the package introduces XGpred() for risk prediction based on survival data, with the XGpred_predict() function available for predicting risk groups in new datasets.
The methodology is based on our new algorithms and various references:
- Hastie et al. (1992, ISBN 0 534 16765-9),
- Therneau et al. (2000, ISBN 0-387-98784-3),
- Kassambara et al. (2021) ,
- Friedman et al. (2010) ,
- Simon et al. (2011) ,
- Harrell (2023) ,
- Harrell (2023) ,
- Chen and Guestrin (2016) ,
- Aoki et al. (2023) .
How to cite:
Aixiang Jiang (2024). csmpv: Biomarker Confirmation, Selection, Modelling, Prediction, and Validation. R package version 1.0.3, https://cran.r-project.org/web/packages/csmpv. Accessed 22 Dec. 2024.
Other packages that cited csmpv R package
View csmpv citation profile
Other R packages that csmpv depends,
imports, suggests or enhances
Complete documentation for csmpv
Functions, R codes and Examples using
the csmpv R package
Some associated functions: LASSO2 . LASSO2_XGBtraining . LASSO2_predict . LASSO2_reg . LASSO2plus . LASSO2plus_XGBtraining . LASSO_plus . LASSO_plus_XGBtraining . XGBtraining . XGBtraining_predict . XGpred . XGpred_predict . confirmVars . csmpvModelling . datlist . rms_model . validation .
Some associated R codes: LASSO2.R . LASSO2_XGBtraining.R . LASSO2_predict.R . LASSO2_reg.R . LASSO2plus.R . LASSO2plus_XGBtraining.R . LASSO2plus_binary.R . LASSO2plus_continuous.R . LASSO2plus_timeToEvent.R . LASSO_plus.R . LASSO_plus_XGBtraining.R . LASSO_plus_binary.R . LASSO_plus_continuous.R . LASSO_plus_timeToEvent.R . XGBtraining.R . XGBtraining_predict.R . XGpred.R . XGpred_predict.R . confirmVars.R . coxTimeToEvent.R . csmpvModelling.R . data.R . find_non_overlap_sets.R . getProb.R . gettValue.R . glmBinary.R . lmContinuous.R . rms_model.R . standardize.R . validate_continuous.R . validation.R . Full csmpv package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
LOGANTree
Enables researchers to model log-file data from computer-based assessments using machine-learning te ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Qi Qin (view profile)
dmlalg
Implementation of double machine learning (DML) algorithms in R,
based on Emmenegger and Buehlmann ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Corinne Emmenegger (view profile)
composits
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Sevvandi Kandanaarachchi (view profile)
tropAlgebra
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Muhammad Kashif Hanif (view profile)
Rfast2
A collection of fast statistical and utility functions for data analysis. Functions for regression, ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Manos Papadakis (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)